BAC Information

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BAC

Clone NameMSMg01-088M05
Chromosome3 (Build37)
Map Location 130,598,292 - 130,598,580
singlet/doubletsinglet
Overlap genenone
Upstream genePla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811
Downstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088M05.T7 (MSMg01no088_m05.b1)MSMg01-088M05.TJ (MSMg01no088_m05.g1)
ACCAG307434AG307435
length714752
length of high quality
(start - end)
---289 (192 - 480)
definitionCHROMAT_FILE: MSMg01no088_m05.b1 PHD_FILE: MSMg01no088_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:21 2005CHROMAT_FILE: MSMg01no088_m05.g1 PHD_FILE: MSMg01no088_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGGGGGATNNNNNNNNTNNCTTTTTTTTTTTTTNNNNNCNNNCNNNNNN
NNNNTTTTTTTNNNNNNNTNNNNCNTCCCTTTTTTTTTCTNNNNNCNNTN
NNTCCCTNNCCTCCCCTTNNNCCTTTTTTNTNTTCCCTTNCTCCTNNTCT
TCCCCNNNTNNNCNCCNCCCCCNNCCCTTTNAACATTTTTCCCTCTTTTN
NNNTTTTTNTNNCTCCCCCCCNNNNNNNNNNNNNNNNNNTCTCNNNNNNC
CTCTTCTAATAATTTTGCGGCCGGCTAATACNAACTCACNTTTCAGAAAA
GNAGGNNATCCGCGGNAATTTCACATTATTCCGGCATGCACGCCCTTCTT
GAAAATGCCCCGAAAATGGCCCCTTCCTTCGGTTCCACTTTTTTCCCTTC
CTTCGGAAAAAACCTTAAAAAAGGGGGGTTTTACACGCCCCTGGTTGGAA
ATATCCGNCCTTTGCCCTTTCCCCCCTTTTAATTCCCTCTAATGGGAAAA
ATTTAAAACTTTTCTCCCCTTCACCCTTTTTTTTCACCGGGGGAAAACCT
TTTGGGCTCTTTTTTTGTGGTTTTTTTATGAAAAATATATTTTTTTTTTT
TTGGCCCCTCTTTCTCCCCCACATTTTTTTTGCGACAAAAAGAGAAAGTG
TTTTAAATTATTTTTTTTTTTTTTTGGCTTCTCTTTTGTTATATTATAAT
GAGGAGGGAGGGGG
TTTTTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTTTTCCTTCTCCTCTTN
NNNCACTAATNTTTTAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATTC
AGGTGCTCATGTGTGCAGCATGTGTGTACTTTCTTGCTCATCCATTGCCC
CAGCCTGAGAGGTACAAATGCCATTTCTACAGAAATTTTTTAATAATAGA
ATTCAAGTCCAAGAAAGCCTTGGAAAGGCCACAGGTAGTTAAATAACTTG
AAATTTGCTTCAACCTACTCAGGACTAAGTAAAAAAGTAAGTAAATAAGT
AATTGATCAATAAAACAGACAAATAAATGGAAATCAGAAAATATACCAGA
GCTGATATTTCTGGGTCTTTGAATAATATTACCAAGCGCTTATAACCTTA
TACACAAATAACGTCTGCATTAGGAGCTAAAGCCACCGGCTTAGCAGTAA
GAATACTCTGCTCCTGCCAGGACCTGGGTTCAATCCCCAGCATCCACGTT
TATGCATCTCACAACTGCCTGTAGCTCCAATTTCCTGGGGTCTTATGCCC
TCTTCTGGTCTCTAAAGGCACTGTGCGAGCGCACTATACACCACACATAC
ACTCAATCACACTCCTTACATATATGTAGAAATAATAATTTTAAAATTAA
GTTCTGTCTGCGTGAACACCTACATTTGCCCCCACATACTGCAATACTTG
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_m05.g1 MSMg01no088_m05.g1 CHROMAT_FILE:
MSMg01no088_m05.g1 PHD_FILE: MSMg01no088_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:21 2005
         (289 letters)



>mm_chr3_130598092_130598780
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccattgccccagcctgagaggtacaaatgccatttctacagaaattttttaataatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccattgccccagcctgagaggtacaaatgccatttctacagaaattttttaataatagaa 260

                                                                       
Query: 61  ttcaagtccaagaaagccttggaaaggccacaggtagttaaataacttgaaatttgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaagtccaagaaagccttggaaaggccacaggtagttaaataacttgaaatttgcttc 320

                                                                       
Query: 121 aacctactcaggactaagtaaaaaagtaagtaaataagtaattgatcaataaaacagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacctactcaggactaagtaaaaaagtaagtaaataagtaattgatcaataaaacagaca 380

                                                                       
Query: 181 aataaatggaaatcagaaaatataccagagctgatatttctgggtctttgaataatatta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 aataaatggaaatcagaaaatataccagagctgatatttctgggtctttgaaaaatatta 440

                                                            
Query: 241 ccaagcgcttataaccttatacacaaataacgtctgcattaggagctaa 289
           ||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagtgtttataaccttatacacaaataacgtctgcattaggagctaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)