BAC Information

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BAC

Clone NameMSMg01-089B07
Chromosome3 (Build37)
Map Location 40,517,610 - 40,517,927
singlet/doubletsinglet
Overlap geneSlc25a31
Upstream geneLOC100041443, LOC100041458, LOC100040882, Intu
Downstream geneHspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089B07.T7 (MSMg01no089_b07.b1)MSMg01-089B07.TJ (MSMg01no089_b07.g1)
ACCAG307671AG307672
length688693
length of high quality
(start - end)
321 (35 - 355)482 (74 - 555)
definitionCHROMAT_FILE: MSMg01no089_b07.b1 PHD_FILE: MSMg01no089_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:46 2005CHROMAT_FILE: MSMg01no089_b07.g1 PHD_FILE: MSMg01no089_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATATG
TAGATCAGGCTAGCTCCAAACTAAGAGATCTGCCTATCTCTACCTCCTGA
GTGCTGGGATTAAAGGCATGCACCACCACATCAGGCTTATAACTAAAAAT
TTAAAAATAGAATGCCTATATAGCAATTGGAACACCATGATGATAAGTCC
AAGGGCCTACCAAGGTGACATTTGGAGGCCTGTTTCAAAATAGGTGACCA
GTCTTTAACTTATCTGCTTCAAATATTTAAGTGAAGTATTCAAGTCTGGC
TGTGCTTTCCAAAGCTAATGTAATTGTATCTTAAGTATTTGTCAGGTTTT
TTTCTGACCCTCCCCATAATTGTGTTTTTTTTATTTTAAAAATATACCTC
TTGAAGTATGACTTTTGTAACATGAATTAATTTTTGTTTTCCTGGTCCTC
ATTATCTTTACCTTCCAAGATGTAATCATAAGCAGAACTTGGAGAATGTT
CTGTCCTTCCATGTGAATCACTGTTACCTGCATCAGGATAGCCTGTGCTG
ACGGGTGCTTCCCAGCAGGAAGAGGGTTGCTACCTAGAGGCAGTTTTGAA
ACTTTATGCGGGGAAATTTTATATGCACAGTTCAGAGGAATATACTTGTA
TGTCCAAAAGCCCTGCAAGGCACGCAAAGGCCCGAAAG
CGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTCTTCTAACATTCGAGTCCTGGGA
ATTGTCATCAGGCATGCTCAGGTGTTCTTACCTGGTAAACTGTCTCACTA
CTTAGTACTGCTTAGTTTTGTGTCAACTTGACACAGGCTGGGGTTATCAT
AGAGAAAGGAGCTTCAGTTGGGGAAATGCCTCCATGAGATCCAACTACAA
GATCTCTCAACTAGTGATCAAGGGGGAAAGGCCCCTTGTGCGCGGGACCA
TCTCTGGGTTGGTAGTCTTAGTTCTATAAGAGAGCAGGCTGAGCAAGCCA
GGAGAAGCAAGCCAGGGGAAGCAAGCCAGTAAGGAACATCCCTCCATGGC
CTCTGCCTTAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTTACTT
CCTTTGTGATGAACAGCAATATCGAAATGTAAGCTGAATAAACCCTTTCC
TCCCCAACTTGTTTCTTGGTCATGATGTTTGTGCAGGAATAGAGACCCTG
ACTAAAACAAATTGGTACCAGCAGAGTGAGGTATTCCCCGTGACACCCTG
ACCATGTTTTTGGGGAGGACTGTGGAAGGACTTTGCAAACTTTGGGCTAG
AAGAATCCTTCGGTGGTAAAGAGCTCTGCCGGAATTGCGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_b07.b1 MSMg01no089_b07.b1 CHROMAT_FILE:
MSMg01no089_b07.b1 PHD_FILE: MSMg01no089_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:46 2005
         (321 letters)



>mm_chr3_40517407_40518127
          Length = 721

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%), Gaps = 2/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatatgtagatcaggctagctccaaactaagagatctgcctatctctacctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatatgtagatcaggctagctccaaactaagagatctgcctatctctacctcc 263

                                                                       
Query: 64  tgagtgctgggattaaaggcatgcaccaccacatcaggcttataactaaaaatttaaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgagtgctgggattaaaggcatgcaccaccacatcaggcttataactaaaaatttaaaaa 323

                                                                       
Query: 124 tagaatgcctatatagcaattggaacaccatgatgataagtccaagggcctaccaaggtg 183
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 tagaatgcctatatagcaattggaacaccatgatgata-gtccaagggcctaccaaggtg 382

                                                                       
Query: 184 acatttggaggcctgtttcaaaataggtgaccagtctttaacttatctgcttcaaatatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acatttggaggcctgtttcaaaataggtgaccagtctttaacttatctgcttcaaatatt 442

                                                                       
Query: 244 taagtgaagtattcaagtctggctgtgctttccaaagctaatgtaattgtatcttaagta 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 443 taagtgaagtattcaagtctggctgtgcttttcaaagctaatgtaattgtatcttaagta 502

                              
Query: 304 tttgtcagg-tttttttct 321
           ||||||||| |||||||||
Sbjct: 503 tttgtcaggctttttttct 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)