TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACGAAATTATGGTCAGTAGCAAATGGCTTGTCCAGCTAGACAGTAG
TTTAAACAGGAAAAAATTGGACATTTGAGAAAAGTCTCTGGAGAAGCATT
TTTAATTGGATACACAGAGATGGGGACCATGTATGAAATATGTCTATATT
ACATGTGAATTTCCACCAGAGAACACTTGTAGAGAAATAAGAAACAAATA
ATTGGACATTGTTTTTCATACAGTTAACTCCAGCGAGCCTCTATCACTGT
GGTGTTCCAGGGCTACACAGTATATTCATGAAGGAAACAGTGATAGTGGC
TGAGATTATCTATGGCTTGCCCCCGACGTTTGGGCTCCATTTAGCAGGAT
AGAATTATCCTTTCTATGAAATGCCTATGGTTCAAAAGATAGAGGCGGAA
TTCAACATATTTAGGGTCTTTTTCTTTGAGGAACTCTACTAGTTACTGAA
GCGAAGTTGACTGCATAGAGAACCTGTCAAGAGGAAAGGATCATGGTGGA
TCTGACAGGAAAACTACATATTATAATAAGAGTTTAACCAAGTATTTGGT
TCAACAGCGTTGAAATCTTTTCTAACACTGCTGCAGACCCAGTACAGGGG
AATGTCAGGCCCCAATAATGGCAGTGGCTGGCTAGGAAACT

ACGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGACCTGTTTTATGCTTTCGGAGAG
TGCTTCCCAAAACCTCTGCTGGACTCAGTTCTGTTTCATCTATTGGAAAT
ACATGTCAGTCCCACCACTTCATTCACATAGTGTCTCTTTTCTGGCACTG
AAGAGGATGGGCAACCCACGTCCATAGTTCATTCCACTCTTACCTGCAAA
GTGCTGATATGAACAGGGGTCCCCGTGCCGTTTACAGTATTCTTCTTAGC
TGCGTTTCCACCTTTCCCATCTGCTTGCTCAGCCTTAGCTATTCGGGCCT
TCTCGGCTTCTATCCTTTTGGCATTGTTCAGCATCACCTGGACCACAGCG
TACTCCACGAGGGAGGCAAACCCGAAGAGCAGGCAGGCAATGAGCCACAC
ATCCAGCGCCTTCACATAAGACACTTTAGGAAGCTCGGCTGCGAGGGTGG
TGCACTCTGAGGCCAAACTGAGCACGGAGAAGATGCCTAGCAACAGGAGA
ATCAGCTGGGTTTAGCCCTGGAAAATGCTTTACAACTATTGCTCATTCAC
TATTGAGCAAGCAACCCTTAGTGTCTTTAAGGATCAAGACTGGAAGAAAT
ATATTGTACTATGTAAAGTACTAACTGTGGTTAA

Query= MSMg01no089_b16.b1 MSMg01no089_b16.b1 CHROMAT_FILE:
MSMg01no089_b16.b1 PHD_FILE: MSMg01no089_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:48 2005
         (318 letters)



>mm_chr3_80756861_80757578
          Length = 718

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacgaaattatggtcagtagcaaatggcttgtccagctagacagtagtttaaac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctacgaaataatggtcagtagcaaatggcttgtccagctagacagtagtttaaac 456

                                                                       
Query: 65  aggaaaaaattggacatttgagaaaagtctctggagaagcatttttaattggatacacag 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aggaaaaaattggaaatttgagaaaagtctctggagaagcatttttaattggatacacag 396

                                                                       
Query: 125 agatggggaccatgtatgaaatatgtctatattacatgtgaatttccaccagagaacact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agatggggaccatgtatgaaatatgtctatattacatgtgaatttccaccagagaacact 336

                                                                       
Query: 185 tgtagagaaataagaaacaaataattggacattgtttttcatacagttaactccagcgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtagagaaataagaaacaaataattggacattgtttttcatacagttaactccagcgag 276

                                                                       
Query: 245 cctctatcactgtggtgttccagggctacacagtatattcatgaaggaaacagtgatagt 304
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 275 cctctatcactgtggcgttccagggctacacagtatattcataaaggaaacagtgatagt 216

                      
Query: 305 ggctgagatta 315
           |||||||||||
Sbjct: 215 ggctgagatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no089_b16.g1 MSMg01no089_b16.g1 CHROMAT_FILE:
MSMg01no089_b16.g1 PHD_FILE: MSMg01no089_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:48 2005
         (286 letters)



>mm_chr3_80654460_80655145
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgacctgttttatgctttcggagagtgcttcccaaaacctctgctggactcagttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgacctgttttatgctttcggagagtgcttcccaaaacctctgctggactcagttctg 260

                                                                       
Query: 61  tttcatctattggaaatacatgtcagtcccaccacttcattcacatagtgtctcttttct 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcatctattagaaatacatgtcagtcccaccacttcattcacatagtgtctcttttct 320

                                                                       
Query: 121 ggcactgaagaggatgggcaacccacgtccatagttcattccactcttacctgcaaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcactgaagaggatgggcaacccacgtccatagttcattccactcttacctgcaaagtg 380

                                                                       
Query: 181 ctgatatgaacaggggtccccgtgccgtttacagtattcttcttagctgcgtttccacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgatatgaacaggggtccccgtgccgtttacagtattcttcttagctgcgtttccacct 440

                                                         
Query: 241 ttcccatctgcttgctcagccttagctattcgggccttctcggctt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcccatctgcttgctcagccttagctattcgggccttctcggctt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)