BAC Information

Click to search

BAC

Clone NameMSMg01-089D20
Chromosome3 (Build37)
Map Location 40,378,830 - 40,379,135
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089D20.T7 (MSMg01no089_d20.b1)MSMg01-089D20.TJ (MSMg01no089_d20.g1)
ACCAG307789AG307790
length694714
length of high quality
(start - end)
326 (20 - 345)249 (73 - 321)
definitionCHROMAT_FILE: MSMg01no089_d20.b1 PHD_FILE: MSMg01no089_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:58 2005CHROMAT_FILE: MSMg01no089_d20.g1 PHD_FILE: MSMg01no089_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAATACACTCCTATAGGGAGAGATCCGCGGAATTCCTGCCTTG
GGCCTCCAAGTAGGCTGAGAGTAACACAAGCTGGGAGCTTCCAGCCACAT
CTAGAGGCTCTCCTCTGCCTGGCGTTCTTCTCCTCAGTGCATGGGTACCT
GCTTATCCTACACCCCTGACGACCTCTCCGGTTTACTCCTGTTTTGTGGG
GCCTCACAAATGCTCCCTCCTGAGTATCAGCCCAAATCTTGCTTCTTCCC
AAAGGTCTTTTACTCTTTCTTCTTTCTCACTTCGCCGTTCCTGTCTGTCT
CCTTATTTCAAAACTCAGCCATTTCTGGCAAACCAGAGTTCGTCATATAT
TTTCTTACTCGCCACCCCCACCTAAGTAGACCAAGCCAAGCCCTTTCTCT
GGTGGCCCAAATGTGAGAAACTAAATCAGTCCCCTAAGGTTGGTGACTTG
CCTATTATATATGGCAGGGCACTGTGGAAACTGAGGGCAGAAATGAAAGC
CAATGCCCCCAGGTTTTTGATACTTAAGTCCAAGAGGCTTCAGATGTGTA
AGAAAGGTCAGGTAGATGTTAGGCCGTAGAAATGCTCAAGTCATGTTCCT
TGAAAGAGTGTGTCTTTGTCTACTGAATATTTCAGCTGAAGGAATTTGCG
AAAGCATGTGAAGATAGTTTTCTCTGACTTCTCCCCACTGTGGA
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTACAGACTTTTATCATGAAT
GATTGTTGGATCTTGTTGAATGCTTTTTCTGCATCTAATGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTATGTTGATGTTTT
CCGTATATTAAATCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAG
GATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGGGAGAATTTTA
TTGAGGATTTTTGCATCTATATTCATAAGGGAAATTGGTCTGAAGATCTC
TATCTTTGTTTTTTCTTCCTCCCCCCCCACCTATCAGAAGTATTTGCGGC
TTCCTTAGCAATGACCCCCCCAAAAGATACATCTACTTCCACCTTGTGGA
ATAGTTTGCGCATAACTGGAATCACATCTTCTTTGAAGGTCCCATAGAAC
TCTGCACTAAACCCATCTGTCCTCAGGCTTTATTTGCTTGTCACAATCTC
AATGTACACTTTCCACTCCCTTCATCATAAATGCCCACTGCTTACATTAT
TTATCCCGACTTTTATCTTCCAACTCCTTCTTCCTCTTCTTTCCTTTCCC
CTCTCTCCACCTTTTTCTCGTTTTTCCCTTCCTCCCCTTCCTCCCCTCCC
TCTTTCCTTTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_d20.b1 MSMg01no089_d20.b1 CHROMAT_FILE:
MSMg01no089_d20.b1 PHD_FILE: MSMg01no089_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:58 2005
         (326 letters)



>mm_chr3_40378614_40379335
          Length = 722

 Score =  540 bits (279), Expect = e-158
 Identities = 301/311 (96%), Gaps = 6/311 (1%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggaattcctgccttgggcctcc-aagtaggctgagagtaacacaagctgggagcttccag 75
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 522 ggaattcctgccttgggcctccaaagtaggctgagagtaacacaagctgggagcttccag 463

                                                                       
Query: 76  ccacatctagaggctctcctctgcctggcgttcttctcctcagtgcatgggtacctgctt 135
           |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||
Sbjct: 462 ccacatctagaggctctcctctgcc-----ttcttctcctcagtgcatgggtacctgctt 408

                                                                       
Query: 136 atcctacacccctgacgacctctccggtttactcctgttttgtggggcctcacaaatgct 195
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 407 atcctacacccctgacgacctctccggtttactcctgttttgtggggcctcacaaatggt 348

                                                                       
Query: 196 ccctcctgagtatcagcccaaatcttgcttcttcccaaaggtcttttactctttcttctt 255
           ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 347 ccctcctgagtatcagcccaagtcttgcttcttcccaaaggtcttttactttttcttctt 288

                                                                       
Query: 256 tctcacttcgccgttcctgtctgtctccttatttcaaaactcagccatttctggcaaacc 315
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 287 tctcacttcgccgttcctgtctgtctccttatttcaaaactcagccgtttctggcaaacc 228

                      
Query: 316 agagttcgtca 326
           |||||||||||
Sbjct: 227 agagttcgtca 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 722
Length adjustment: 9
Effective length of query: 317
Effective length of database: 713
Effective search space:   226021
Effective search space used:   226021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)