BAC Information

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BAC

Clone NameMSMg01-089E09
Chromosome3 (Build37)
Map Location 36,287,974 - 36,288,187
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
Downstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089E09.T7 (MSMg01no089_e09.b1)MSMg01-089E09.TJ (MSMg01no089_e09.g1)
ACCAG307815AG307816
length709746
length of high quality
(start - end)
220 (23 - 242)119 (185 - 303)
definitionCHROMAT_FILE: MSMg01no089_e09.b1 PHD_FILE: MSMg01no089_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:01 2005CHROMAT_FILE: MSMg01no089_e09.g1 PHD_FILE: MSMg01no089_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACTAATGATACTTTATT
TAGGAATTTCACTTGTATCATCATAGCTGAAGTAAGTATATTATTTCCTC
CCCTTCCTCATGATTTGGAAATGGGGATTTCATTAGCTTTATCACATAAA
AGAACAACTTAGCTCCTTTTTCCTTTAATTTACCAGAATAATTTAAATGA
TAAAGGAATTGCTTTTCCTTTAAAAATTAGTAAAAAAAAACAAACTAAGC
TTGAGGCATGTTGATGATAATTTCGACTTACTGCTTACTTGTTGTTCAGT
TTTCTTCTTTTTCCCTCCCTTCTTTCTCTGCGCTTTTGTGATGTTGCCTC
CTGCCCACTCCTTTAGGAATTTTAATCTGTATCTCTATTTGAGCCACCCA
GAAAACATTTAGGCCTCTCTGGTTCTCCTATTATAGTATATTTAATGTCC
GCCCTATTCTATTCCCTGCATACCTTTTATTCTTCTCCCCATGCCCTCTG
TGGGACCCCTCTTAGGTTGGCATTTTGCCCCTATCCCCTTCCTTTATTTT
TTTTCCCCCTTCCTGCGTTTCTTTTTTCCGCTTTCCTTTCCCTTTTTCCC
CTTTATTTCCCCCATTTTCCCGTTCCCTTTTCCCCGTTAACACCTCCCTG
TCACTTTTTTTATACCCCCTCTCCACCGCATGCTTTTTATTTGTCCCCAC
ACCCTCTTC
TTTTGGGGGNNNNGGGNNNGGCGGTGGTTTTTTTGTTNCNCTTCCCTTCC
CCTTATAATGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTACTAATAGACTCACAGG
TGGAGGCCAGTGAAGTCGCACATCTGCCCGAGGAGTGATGACGTGCCAGC
TGGGCACGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAG
AGTGAGTTCCAGGCCAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAA
ACCTAATAATAAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAA
TAAAGGATGCTTTATTAACAAAAGAAAGAAAACCTGGATCTCCAGGACTC
TTGAGGTACAACATCTTCTGTATGATTTTTTTTATCCCTTTCACCAAAAA
GCATTAAGTCATATGTTTGCGTTCCCCCCCCCTGATAATATTCCATAATA
GCTTTCAATTATCTTACACCCTTCACAGGTTACTGTCTTTGCCCCATGCT
GCAGTTTGGCCAAACATGACACGTCGTGAGAGTTGGTCAGATGACTGAAG
ATAAATTGCATACTGTGTAAGCTGGAAGACCTTAGCTTGTACTTTTTTCA
CCCTTCCATTACCCCGTTCCTGTGTTTACTCAATCCCTCACCTTTTACTC
ATCTATTCGCCCGGCTAATCGCTTACTTATCACTGCCCTTTCGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_e09.b1 MSMg01no089_e09.b1 CHROMAT_FILE:
MSMg01no089_e09.b1 PHD_FILE: MSMg01no089_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:01 2005
         (220 letters)



>mm_chr3_36287770_36288389
          Length = 620

 Score =  360 bits (186), Expect = e-104
 Identities = 207/214 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctactaatgatactttatttaggaatttcacttgtatcatcatagctgaagtaag 64
           |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaccaatgatattttatttaggaatttcacttgtatcatcatagctgaagtaag 264

                                                                       
Query: 65  tatattatttcctccccttcctcatgatttggaaatggggatttcattagctttatcaca 124
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatattatttccttgcattcctcatgatttggaaatggggatttcattagctttatcaca 324

                                                                       
Query: 125 taaaagaacaacttagctcctttttcctttaatttaccagaataatttaaatgataaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaagaacaacttagctcctttttcctttaatttaccagaataatttaaatgataaagg 384

                                             
Query: 185 aattgcttttcctttaaaaattagtaaaaaaaaa 218
           ||||| ||||||||||||||||||||||||||||
Sbjct: 385 aattgtttttcctttaaaaattagtaaaaaaaaa 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)