BAC Information

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BAC

Clone NameMSMg01-089I23
Chromosome3 (Build37)
Map Location 29,554,617 - 29,554,932
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089I23.T7 (MSMg01no089_i23.b1)MSMg01-089I23.TJ (MSMg01no089_i23.g1)
ACCAG308028AG308029
length724941
length of high quality
(start - end)
322 (21 - 342)40 (135 - 174)
definitionCHROMAT_FILE: MSMg01no089_i23.b1 PHD_FILE: MSMg01no089_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:24 2005CHROMAT_FILE: MSMg01no089_i23.g1 PHD_FILE: MSMg01no089_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTCCTATATTCCGAGGATCCGCGGAATTCTTGTTTAAATCTCACCTA
AACGCAACCAATCTGAGTGGGTAGAATTTAACCTGGGAGATCTGGTTCTT
GACATCAACAATGTTCTATGTACTATTACATTGATTCGACATCAATCAAT
TTATGTATTTTGGAAACTGATGGGTATTGTCCTGATGGATTAGGAAATAT
CAACCCTGGTTTAAATAACTCTTTACACAGTGGCAAACAGGAAATGTGCT
CAGCTCTGTGTCATATGTTCTATGTTAGCATATCTTAAAAAGCCCATCAC
TTGTTACTCTTCAGCCCTTTGTTTTATCCTTTAGTTTTCTCAGTCTTAAG
CCCAAGACTTTTAACAGTACATTGATTAGCATAATTGTCCTTTTATTGCA
CCTATCTTTGGGAATGTGTTTTTGAATATTTGCTGTAAGCTGTTATGGTC
AATTCTGACGGACTATTGTCTTTGCCCTTTGAAGGCATTTGCTGTGTTCC
CTGCTACGCTATATACTGCTATTTGTTGTATCCAGATTTTTGCGTTGTCG
GTTCCTTCTTTTTGTACACCCATACTCTCTTTTTATTCCCCCTGTTTCTA
TCCCTGTTTCCCCCTTATTTCCCTTTTTTTCCAATCACTCTTCCGCCCTA
ACTTCTTCCTTATAATTCTTTTTTTCCGCGCTTCTTTTCCCTCTGCCTTC
ATTTTTGCCCCCCCCCCTCCTTCC
TTTTTTGGTTTTTGTTTTTTTTTCCTTGCTTTTCCTCTCTTCCCCCCCCC
TCCTTCTCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACCAGGAATGGG
AGTGGGTGGGTTGGGGATCAGGGAGAGTTTTTCCCCCCTTTAACATTTTT
TTATATTTTCTCCTTCCTTTTTCTCTCCCTTTCTTTTTTTTTTTCTTCTT
CTTTCCTCCTTACCTCTCCTTTCCTTTTTTTTTTGTTTATCTTTCTTACT
CATTTTTTCTTTACTATTTTATTTTTTTTCTTTATCTTTTCTTTTTTTTT
CTTCTCTTCTCCTATGATTCCTTTCCACATTACGTTCCACTAACATAAAC
CCTCGTCCGTCTAATTTTTTTTTTTTTCTCTTTCATCTCACTATTTCCTT
TTCCTTCCTTCTTTTTTTTATCTCCTTCCCTCCTTACTTTTTTTTCCCCC
CTTTCTATTCTATTTTTTTTCCCCCTTCCTCCTCCTCCTCTCCCTCTTCT
ACTTTTACTTACCTTTTCCTCCCTCCTCTTTCTCCTCCTCTCCTTTCTCC
CCATTACTATTCATTTTTCTATCTTCTCCCCTCATCTTATTTTTTCCCTT
CTTATATTCTTTATTTTCTTTATTTCCCTTCCCTTCTCCCCTGTTTTCTT
TCTCCCCTTTTACACTATTATTCGCTTTTCTTCTTCCTGGCTCGCCTCTT
TTTCCCTCTTTCTTCCCTCTTGTTCTTCTGTTATTCTTTTATCTCCTCTT
CTCTCTCCTTTTTTTCCCTCGCTTTTACCTTTCTTTTTTTCTCTTCTTTT
TTCCTCCCTCCTTTTTATCTTTCTTATTTTTATTTCCCCCGCTCCCCTTT
CCTTTCCCTTTTATTATCCCCTTTCCCCTCTTAGCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_i23.b1 MSMg01no089_i23.b1 CHROMAT_FILE:
MSMg01no089_i23.b1 PHD_FILE: MSMg01no089_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:24 2005
         (322 letters)



>mm_chr3_29554411_29555132
          Length = 722

 Score =  549 bits (284), Expect = e-161
 Identities = 308/316 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttgtttaaatctcacctaaacgcaaccaatctgagtgggtagaatttaacctgg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttgtttaaatctcacctaaacgcaaccaatctgagtgggtagaatttaacctgg 266

                                                                       
Query: 67  gagatctggttcttgacatcaacaatgttctatgtactattacattgattcgacatcaat 126
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 gagacctggttcttgacatcaacaatgttctatgtactattacattgatttgacatcaat 326

                                                                       
Query: 127 caatttatgtattttggaaactgatgggtattgtcctgatggattaggaaatatcaaccc 186
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 327 caatttatgtattttggaaactgatggggattgtcctgatggattaggaaatagcaaccc 386

                                                                       
Query: 187 tggtttaaataactctttacacagtggcaaacaggaaatgtgctcagctctgtgtcatat 246
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 387 tggtttaaataactctttacacagtggcaaacaggaaatgtgctcacctctgtgtcatat 446

                                                                       
Query: 247 gttctatgttagcatatcttaaaaagcccatcacttgttactcttcagccctttgtttta 306
           | ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 gctctgtgttagcatatcttaaaaagcccatcacttgtcactcttcagccctttgtttta 506

                           
Query: 307 tcctttagttttctca 322
           ||||||||||||||||
Sbjct: 507 tcctttagttttctca 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)