BAC Information

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BAC

Clone NameMSMg01-090C07
Chromosome3 (Build37)
Map Location 155,339,518 - 155,339,793
singlet/doubletsinglet
Overlap genenone
Upstream geneBC007180, Tnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1
Downstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, Negr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090C07.T7 (MSMg01no090_c07.b1)MSMg01-090C07.TJ (MSMg01no090_c07.g1)
ACCAG308452AG308453
length707713
length of high quality
(start - end)
467 (43 - 509)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no090_c07.b1 PHD_FILE: MSMg01no090_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:12 2005CHROMAT_FILE: MSMg01no090_c07.g1 PHD_FILE: MSMg01no090_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGATCTTCCCAGACTTTTATCATGAATGGGTGTTGGATTTTGTTGAA
TGCTTTCTCTGCATCTAAGGAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAATGGATTACATTGATGGATTTTCATATATTAAACCATCCC
TGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAAT
GTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGA
TATTCATAAGAGAAATTGGTCTGTAGGCCATCTTTTGATACATACGCAGC
TAGAGTCAAGAGCTGTCAGGGGTACTGGTTAGTTCATATTGTTGTTCCAC
CTATAGGGTTGATGATCCCTTTAGCTCCTTGGGTATTTTCTCTAGCTCCT
CCATTGTGGGCCCTGTGATCCATCCAATAGCTGACTGCAAACCTCCTCTT
TAAGGAGATAGAGAACAACCTTGAAGAGGAACGCGAACCCTACGTGAATA
AAATCGATAGCATTTTTGTCTTTCAAAAGAAAGATGTCCCTTGGGTCCAA
GAAACTACCTGGGTGTTGCACATGACCACCTGCACAGGATCTGTTGTTTT
CCGATTCACTATATGCCCACCGCTCTATTCTTTTGTCTGCACTCCCACTT
TCTGGCA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGACAGTGGACTGCATAATGGGAC
TCTGTATCAAAACAAAACAAAATAAATAAATAAATAAATAAATAAATAAA
TAAATAAATAAATAAATAAATAAATAAATACACACACACACACACACACA
CTCTTCATGATTAGCTTAAATACCCCCCCAGATGTGGCCTGATGTTTTTT
CCAGATATTTTATTTATTGTCTAATTATTTCTTGATTCTTTGCCCTCCCT
AAAAAAAAATGAAGTTCTATTAGGGAGAAGGTTTTCATTTGTTACTTGGA
TGAACGGTTGAATGAATGAACGACCGACCGAGTGAATTAATTAATTAGTA
AATAGAAGCAATAGCTTTAAAGTAACATGGTTTTAACATTTTTAGTATTG
TAGGAAACAGCCTTTATTTGAAGAAAGGTTCAATATAACAGAAACAAGAT
AGGAAAAGAGACAGGATTAAAAAACTTGGGAGATTTAAAACAGAACTTTA
TTCTCTGTAGCAAGCTACACTTTCCACTTCTATAAGCAACTCATATCTGT
TCTAAGATGATAATTTTTCAAGCCCAGGGGTTGCAATTTTGAGATAACAA
TTGCATTTTTGAAAGATATTGTTCTTAGGAGGAAAATACCTCAAGAAAAA
TGCTTGAAAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_c07.g1 MSMg01no090_c07.g1 CHROMAT_FILE:
MSMg01no090_c07.g1 PHD_FILE: MSMg01no090_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:12 2005
         (285 letters)



>mm_chr3_155339191_155339874
          Length = 684

 Score =  377 bits (195), Expect = e-109
 Identities = 260/287 (90%), Gaps = 13/287 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgacagtggactgcataatgggactctgtatcaaaacaaaacaaaataaataaataaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |       |||
Sbjct: 603 catgacagtggactgcataatgggactctgtatcaaaacaaaacaaaaca-------aaa 551

                                                                       
Query: 61  taaataaataaataaataaata-a-ataaataaataaataaataaatacacacacacaca 118
            |   ||||||||||||||| | | | | | | | | | | | | | |||||||||||||
Sbjct: 550 ca---aaataaataaataaacacacacacacacacacacacacacacacacacacacaca 494

                                                                       
Query: 119 cacacacactcttcatgattagcttaaatacccccccagatgtggcctgatgttttttcc 178
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 493 cacacacactcttcatgattagcttaaata-ccccccagatgtggcctgatgttttttcc 435

                                                                       
Query: 179 agatattttatttattgtctaattatttcttgattctttgccctccctaaaaaaaaatga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agatattttatttattgtctaattatttcttgattctttgccctccctaaaaaaaaatga 375

                                                          
Query: 239 agttctattagggagaaggttttcatttgttacttggatgaacggtt 285
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agttctattagggagaaggttttcatttgttacttggatgaacggtt 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)