Query= MSMg01no090_n22.b1 MSMg01no090_n22.b1 CHROMAT_FILE:
MSMg01no090_n22.b1 PHD_FILE: MSMg01no090_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:10 2005
(567 letters)
>mm_chr3_149098465_149099432
Length = 968
Score = 1038 bits (537), Expect = 0.0
Identities = 557/564 (98%), Gaps = 1/564 (0%)
Strand = Plus / Minus
Query: 5 gaattccctcactctcccagccctcactgggccccaggatgaacacttctgaaaccattt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaattccctcactcacccagccctcactgggccccaggatgaacacttctgaaaccattt 709
Query: 65 ctcagcggtccattagcctcatctttagtgtgattcagaatttacatgtgtcgtttgcat 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ctcagcggtccattaggctcatctttagtgtgattcagaatttacatgtgtcgtttgcat 649
Query: 125 aattttgcatgagagtgtctgctttaaattaggtaaaggtcaacgtcattcataatcaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aattttgcatgagagtgtctgctttaaattaggtaaaggtcaacgtcattcataatcaag 589
Query: 185 aggaaggtggattaaaggtcataattcaattagaaaaaaaattcctgattagctgtagaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aggaaggtggattaaaggtcataattcaattagaaaaaaaattcctgattagctgtagaa 529
Query: 245 gtatgctcacgtgattcgatatcgttgaataagtgtgaggcacaagtccacaaactggcc 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 528 gtatgctcacgtgattcgatatcgttgaataagtgtgaggcacaagtctacaaactggcc 469
Query: 305 tcagcgtgagagcattccaagagatttctgtc-aaaaaaaaaaaaaaaaaaatcagactc 363
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 468 tcagcgtgagagcattccaagagatttctgtcaaaaaaaaaaaaaaaaaaaatcagactc 409
Query: 364 tcgccttttttaacctagcctatatagagatacttcagctgatactcttagcactgggtg 423
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 408 tcgccttttttaacctagcctatatagagatacttcagctgattctcttagcactgggtg 349
Query: 424 tcttttataatgtcatttggttttaggaatgacataaatgacaattttatctgcaaaata 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcttttataatgtcatttggttttaggaatgacataaatgacaattttatctgcaaaata 289
Query: 484 nagtggtaagttataatgaattaataataggtggcagctgatcggccagccacacagggc 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 288 aagtggtaagttataatgaattaataataggtggcagctgatcggccagccacacggggc 229
Query: 544 ctgaggttacttctccctgaggtg 567
||||||||||||||||||||||||
Sbjct: 228 ctgaggttacttctccctgaggtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_n22.g1 MSMg01no090_n22.g1 CHROMAT_FILE:
MSMg01no090_n22.g1 PHD_FILE: MSMg01no090_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:10 2005
(292 letters)
>mm_chr3_148968559_148969250
Length = 692
Score = 549 bits (284), Expect = e-161
Identities = 290/292 (99%)
Strand = Plus / Plus
Query: 1 agttagacataaataaaaggcagatctcttgttggcaagatctgccgtgacgagcaaagc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agttagacataaataaaaggcagatctcttgttggcaagatctgccgtgatgagcaaagc 260
Query: 61 ctgtggtttcaatgcagggttttcctgattgtgcagacatctctgattgtccccctgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtggtttcaatgcagggttttcctgattgtgcagacatctctgattgtccccctgaac 320
Query: 121 cccacttgcctggggaatatctactctctttagtactccgttctgtttatccttggtgat 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 cccacttgcctggggaatatctactctcttcagtactccgttctgtttatccttggtgat 380
Query: 181 gtccagaagggactgtcctaaacctctctagaaatctactctacaattacatgcatccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccagaagggactgtcctaaacctctctagaaatctactctacaattacatgcatccac 440
Query: 241 ttagcagtttccaacagttctaggatctggtactaaccaggagactctctag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagcagtttccaacagttctaggatctggtactaaccaggagactctctag 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
