BAC Information

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BAC

Clone NameMSMg01-091B02
Chromosome3 (Build37)
Map Location 94,747,745 - 94,748,002
singlet/doubletsinglet
Overlap geneSelenbp1
Upstream geneTdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4
Downstream geneRfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091B02.T7 (MSMg01no091_b02.b1)MSMg01-091B02.TJ (MSMg01no091_b02.g1)
ACCAG309122AG309123
length802752
length of high quality
(start - end)
52 (191 - 242)244 (82 - 325)
definitionCHROMAT_FILE: MSMg01no091_b02.b1 PHD_FILE: MSMg01no091_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:26 2005CHROMAT_FILE: MSMg01no091_b02.g1 PHD_FILE: MSMg01no091_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTATTTATTTATATNNTTTATATTAAATTCCCAAACAANGCNCNCTTATT
TTGATAATCTATAATTGCGGCCGCTATACGACTCCTATTTCTAGAGAACC
GCGGAATTCTTTGAAAACTCCCAGCTGGCGTTTCTGGCTATCTGGCAGGA
TATAAACTTGATAGAACTGGGTGCCTGGTGACAGCAAGTAATGACAGAAA
TAATGTACATAGCAATCTAAGCCATCACTGCTCCACTTTGGTGTATGACA
TCCCCCTACTGATAAGGTCACTAGTCAATCCATTCCTGTTTACTACATGC
TGCCATAATACACAACATTCCACCCAGCAAAGACAAAGGAAACAGAATCA
GCCTCCTCAGGTATCCTCAGTTCTTCCCCACCAAGCACCATGTACACAAA
GAGCTCTGATGAGTGATGTTCCCCCCATGTATCACAGTCTAATACACACT
ACTTGTACAGGTTGCCATTCCGCACACAGGAATACTCTAGACTTGTTTCT
TTGCTCCGATTTCGACATTACTTCATTTCCCTTAGCGACCTACTTACCCC
CAACCTCATTTTGTTACATATTTCTTGTATATCCTTTTTCCGTCAGTCTT
CCTTCTTCCATTTCCGCCTATTTACCCAGGATCTCTTCCTATCATCTATT
CTCCCTCCCCCTGACTCCCGTTTCAATCCTTTTACTCCCACAGTTTTACT
CACGTTCTTCTCCTTCCTCCTCCCTTCTTCGTTTCGGTCCCCCCCTCTTT
CCTTTCCTCCCCCCCCCCCTCCCTCCTTTTCTTCCCCCTCCCCCTCTCCT
CN
CTTTTACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCCTTGAGGAAACAA
GAGGTCAGACTCCAAGTAACCCCCATATGGCCTAAGCAACTGGTGCCCAC
TTGGCATACCAGCTGGATCCCAAAGCATCCAAGAAGATACTAGAGGGAGC
AGGGAGAAGTTCTCACCTTGACCACTAGGGGCTCCGGCTGACAGGTTAAC
TCTTGGTCCTCCAGCACTTGCACAGAGCCTCCTCTAACAATGCTGCCCCC
AAGGAAGATCTGGAAGCAGGGTTCAGAGGGAAAGGGCGACAACGGTTACA
GATGCAGTGATCATCTTAATGATCCACACTCACTGACTTTTATAGTCAGT
ACGTCCTCATCACCATATACTGACCGACCCCCACATACACACACTCATTC
CCATACAGACCCCTACACCAGACCCCCTCTCATCTCTCCCACTTGTCCAT
TTTCCCCTCCATCTACTTATCCACATACATCCTATTCCCACCCCACTTAT
GTGCACACCTTACCCATACATTACCCTCCTATTCCCCACTACTATCCCTC
CTTCTGTGCCTGTCTGTCGCCCTTTTTAACACCGATTCATCTGGCCAGGC
CACGCACTCCCCCTGGACGCGTAGCGTCCCTATGACCTCGGTCCTCGCTC
CCCCTCGCCCGTTTATCACCGTCCCCTATCGGTGTCCTCCCTTTCCCCCT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_b02.g1 MSMg01no091_b02.g1 CHROMAT_FILE:
MSMg01no091_b02.g1 PHD_FILE: MSMg01no091_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:26 2005
         (244 letters)



>mm_chr3_94747693_94748336
          Length = 644

 Score =  422 bits (218), Expect = e-122
 Identities = 242/258 (93%), Gaps = 14/258 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttcccttgaggaaacaagaggtcagactccaagtaacccccatatggcctaagcaact 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 310 ttttcccttgaggaaacaagaggtcagactccaagtaacccccaaatggcctaagcaact 251

                                                                       
Query: 61  ggtgcccacttggcataccagctggatcccaaagcatccaagaagatact---------- 110
           |||||||||||||||||||||||||||||||||||||||||| |||||||          
Sbjct: 250 ggtgcccacttggcataccagctggatcccaaagcatccaaggagatactctcgagcatg 191

                                                                       
Query: 111 a----gagggagcagggagaagttctcaccttgaccactaggggctccggctgacaggtt 166
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 actctgagggagcagggagaagttctcaccttgaccactaggggctccggctgacaggtt 131

                                                                       
Query: 167 aactcttggtcctccagcacttgcacagagcctcctctaacaatgctgcccccaaggaag 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 aactcttggtcctccagcacttgcacagagcctcctctaacaatgctgcccccaaggaag 71

                             
Query: 227 atctggaagcagggttca 244
           ||||||||||||||||||
Sbjct: 70  atctggaagcagggttca 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)