BAC Information

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BAC

Clone NameMSMg01-091K05
Chromosome3 (Build37)
Map Location 91,743,263 - 91,870,590
singlet/doubletdoublet
Overlap genePglyrp3, EG619750
Upstream geneLOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
Downstream geneLor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091K05.T7 (MSMg01no091_k05.b1)MSMg01-091K05.TJ (MSMg01no091_k05.g1)
ACCAG309533AG309534
length704691
length of high quality
(start - end)
381 (72 - 452)234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no091_k05.b1 PHD_FILE: MSMg01no091_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:13 2005CHROMAT_FILE: MSMg01no091_k05.g1 PHD_FILE: MSMg01no091_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(91,870,210 - 91,870,590)(91,743,263 - 91,743,496)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTCCTATTCCAAATAGAAGAATCTTCTTTATTTCTTCTAAATAATTTT
TAGATTGAAGTCTGTTTTGCCAGTTATTAGAATAGCTACACTTGCTTGAT
TCCCAGTTACAGTTACTTGGACTGCCTTTTTTTTCCATTCATCCACATCA
TTTTGGTGTCTGCCTTTGATGACAGAGGTATATTTCTTTTTCTACCCTAT
AAATTTTATTGGGGAAATAAGACTTTTAATATTCAGGGTTATTACTGAAA
GATATGCATTAAATCCCAATTTTTGGATAAATTTTTGGTTAGTATTTTGT
TAGGAATCTTTCAATTACTAGTCCTAATATTGCTAATTTTCACCCTTGTG
GCCTTGTAGCTTCATTTATTTTTATCTTTATTCTGATGTATCCTCTGTAG
AGCTGTCTTAATGGTCATAAATCCCTTTAGCATGCTTTCATAACGAATAT
CATTACGTTCCCCTCCACTTATAGGGAAATACCTTTCCTAAGTATAGTAT
TTTTCGGCTGGCACTTTTCCATATTTTAGAGCTAGCAAATACCTCCTTTC
CAAGCCCTTACCGGCTTTCAAGGCTTCTTACCAAATAAACAAACTGGTTA
TCCTGATTACGTATGCCCTGTTATATGGGAACTCGTGCTCTCTCTTTCCT
GGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTCCTCTAGGTGTTACTACTCTATA
AGACAGAAAATCCCAGATAGCCCTTGATGAAATAACTCATTAATTTATTC
TTTGAGGATAGTGTCTTATACACATTTAGAGGTGTTTTGGGGTGGACAAA
AGACACTTTATATTTCCTTAGTCTGAGATGTTATGAATACCTCATTTTCA
TAAGCAGGACCTTTGGGTGTTGCTCCTCTGTGACTAATTGTCACAATCCT
CTCCATGGGATGGTGTAAGTATGTTTTCCTAGACAGGAACCTGATCAGGA
GTAGATTAAATGTTTTCGACTCTTAGCACCTATGGAGATTTATGAACGCA
CTTAATCTTTATACCTGGTATCATGGTCCATTGTCACACAGAAGAGGGAA
GAACAGATCTTTTTAAAAGAGGAGAAATATTGAGATACCGGAAGATGAAG
AGTCATGCCTGAAGAGAAAATACTAACTTCTTCTGGATGACGCAGACCAA
TAGAGCTTTTACCCTCTTTAATGCATACTTGTACCTTAATACATATATTG
AATGGAGTATATCATCCAGGAAAAAGGTCCAGTATCCCGTATTTCCCTGT
TCCCAGAACTTGTTCCGCCCCTAAAATTTTACCTCATATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_k05.b1 MSMg01no091_k05.b1 CHROMAT_FILE:
MSMg01no091_k05.b1 PHD_FILE: MSMg01no091_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:13 2005
         (381 letters)



>mm_chr3_91869843_91870623
          Length = 781

 Score =  698 bits (361), Expect = 0.0
 Identities = 376/381 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcttctttatttcttctaaataatttttagattgaagtctgttttgccagttattaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 748 aatcttctttatttcttctaaataatttttagattgaagtctgttttgtcagttattaga 689

                                                                       
Query: 61  atagctacacttgcttgattcccagttacagttacttggactgccttttttttccattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 atagctacacttgcttgattcccagttacagttacttggactgccttttttttccattca 629

                                                                       
Query: 121 tccacatcattttggtgtctgcctttgatgacagaggtatatttctttttctaccctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 628 tccacatcattttggtgtctgcctttgatgacagaggtatatttctttttccaccctata 569

                                                                       
Query: 181 aattttattggggaaataagacttttaatattcagggttattactgaaagatatgcatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aattttattggggaaataagacttttaatattcagggttattactgaaagatatgcatta 509

                                                                       
Query: 241 aatcccaatttttggataaatttttggttagtattttgttaggaatctttcaattactag 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 508 aatcccaatttttggataaatttttggttagtattttgttaggcatctttcaattactag 449

                                                                       
Query: 301 tcctaatattgctaattttcacccttgtggccttgtagcttcatttatttttatctttat 360
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 448 tcctaatattgctaattttcacccttgtggccttgtagttttatttatttttatctttat 389

                                
Query: 361 tctgatgtatcctctgtagag 381
           |||||||||||||||||||||
Sbjct: 388 tctgatgtatcctctgtagag 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no091_k05.g1 MSMg01no091_k05.g1 CHROMAT_FILE:
MSMg01no091_k05.g1 PHD_FILE: MSMg01no091_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:13 2005
         (234 letters)



>mm_chr3_91743063_91743696
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaataactcattaatttattctttgaggatagtgtcttatacacatttagaggtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaaataactcattaatttattctttgaggatagtgtcttatacacatttagaggtgtt 260

                                                                       
Query: 61  ttggggtggacaaaagacactttatatttccttagtctgagatgttatgaatacctcatt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 ttggggtggaaaaaagacactttatatttccttagtctgagatgttatggatacctcatt 320

                                                                       
Query: 121 ttcataagcaggacctttgggtgttgctcctctgtgactaattgtcacaatcctctccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcataagcaggacctttgggtgttgctcctctgtgactaattgtcacaatcctctccat 380

                                                                 
Query: 181 gggatggtgtaagtatgttttcctagacaggaacctgatcaggagtagattaaa 234
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggatggtgtaagtacattttcctagacaggaacctgatcaggagtagattaaa 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)