Query= MSMg01no091_k19.b1 MSMg01no091_k19.b1 CHROMAT_FILE:
MSMg01no091_k19.b1 PHD_FILE: MSMg01no091_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:16 2005
(517 letters)
>mm_chr3_122780601_122781518
Length = 918
Score = 872 bits (451), Expect = 0.0
Identities = 488/505 (96%), Gaps = 13/505 (2%)
Strand = Plus / Minus
Query: 4 ggaattc-aagtagttttc---tcatcatcaagtttattcagagtcttttttaatttaaa 59
||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 499 ggaattcaaagtag--ttcatatcatcatcaagtttattc--agtcttttttaatttaaa 444
Query: 60 aattcttcttggcttttccc---catgataattttgctttattttcctttcatcttagca 116
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 443 aattcttcttggctttt--caaacatgataattttgctttattttcctttcatcttagca 386
Query: 117 ttatgatggtagcgcccacagaataaaaatgcactatgaggatgcagacagtctgttact 176
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 385 ttatgatggtagcgcccacagaataaaaatggattatgaggatgcagacagtctgttact 326
Query: 177 ttagaagttacaaaaaagaaaattgaagaattctcagtaagtggcaagagtggccacatg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttagaagttacaaaaaagaaaattgaagaattctcagtaagtggcaagagtggccacatg 266
Query: 237 ctaatttgttcaatcatgcagcaaagagatagataactacttcccaaaatatgattgcta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaatttgttcaatcatgcagcaaagagatagataactacttcccaaaatatgattgcta 206
Query: 297 gccttatgcctgcatcactctgagggatgaagaaaaaaggttgctgaaaattccatgcca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gccttatgcctgcatcactctgagggatgaagaaaaaaggttgctgaaaattccatgcca 146
Query: 357 gcctgaactacaagtttcacaaaaactagagcaaaagctttcactgttaatttatctaaa 416
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gcctgaactacaagttttataaaaactagagcaaaagctttcactgttaatttatctaaa 86
Query: 417 tcaatatagtattaattcccttaaagtataaaatataattattggcatccatgagggttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 tcaatatagtattaattcccttaaagtataaaatataattattggcatccatgagggttt 26
Query: 477 ttttaatgtatagaatcttaaaaga 501
|||||||||||||||||||||||||
Sbjct: 25 ttttaatgtatagaatcttaaaaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no091_k19.g1 MSMg01no091_k19.g1 CHROMAT_FILE:
MSMg01no091_k19.g1 PHD_FILE: MSMg01no091_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:16 2005
(195 letters)
>mm_chr3_122627056_122627650
Length = 595
Score = 377 bits (195), Expect = e-109
Identities = 195/195 (100%)
Strand = Plus / Plus
Query: 1 gcgcggcggcgggggcggggcgcctagtcgattggcggggttacccggaattggttgcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcgcggcggcgggggcggggcgcctagtcgattggcggggttacccggaattggttgcta 260
Query: 61 gactgggcgcgaagcggtcttcaggtttggtctcagttgcgcggaagtgaaacgacgcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgggcgcgaagcggtcttcaggtttggtctcagttgcgcggaagtgaaacgacgcgg 320
Query: 121 agatggaggtgagccaggcggcgtctggtaccgacggtgtccgggaacggaggggctcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatggaggtgagccaggcggcgtctggtaccgacggtgtccgggaacggaggggctcgt 380
Query: 181 tcgaagctggaagga 195
|||||||||||||||
Sbjct: 381 tcgaagctggaagga 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space: 109769
Effective search space used: 109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
