BAC Information

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BAC

Clone NameMSMg01-091P18
Chromosome3 (Build37)
Map Location 32,771,388 - 32,771,718
singlet/doubletsinglet
Overlap geneUsp13
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5
Downstream genePex2, EG545512, LOC100041058, Ttc14, Ccdc39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091P18.T7 (MSMg01no091_p18.b1)MSMg01-091P18.TJ (MSMg01no091_p18.g1)
ACCAG309783AG309784
length754761
length of high quality
(start - end)
334 (35 - 368)383 (73 - 455)
definitionCHROMAT_FILE: MSMg01no091_p18.b1 PHD_FILE: MSMg01no091_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:40 2005CHROMAT_FILE: MSMg01no091_p18.g1 PHD_FILE: MSMg01no091_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTACAA
TTTAATTGTCTTAGAGAGTATGTTCTATGGATCCACAGACGACTAGTCAA
ACTTATTTAGTCACACCGATTAACTCACTCATTGACTATAGTCAAAAAAC
ACAACTGAACACAAAATACATAGAGATATGAAGGTGCAACACTATGCAAG
ATAAGCAGGGTCCCTCCTCTTGTGACTTTAAAGTCTATCGTCTCAAACAG
TCTTGGAAGTGATGCTAGACTTCAGTGGAGGACCTCAGCAGATACCATCT
TAGCTGAGGTTCATTTGTGTAACACAAGCTCTTCTCAAGGATGCTTTCAT
GCTCAGAAAGGAACAACCAGCCTGGTGAGATGGCTCAGCGGTTAAGAGCT
CACTGCCTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATG
GTGGCTCACAACCATCCATAATGAGATCCTGATGCCCTCTTCTGGTGTGT
CTGACGACAGTTACAGTGTACTTACTTATAATATATACCTATATCTCTGG
TTTGGAGCGAGTGGTGCTGGATCAAGCATGCGTTCTGAGTTCAATTCCCA
GCATTCCCCTTGAAGGCTCACACCTTCTGTATAGCTATAGTGAACTCTCA
TTCCTTAAATAGGAAATCTCTCAACAATATTTCCTTACTAACACCGCACA
CCGATTTATACAAATGCACGCACTCATCTTTTTTATTCACCGAACCACGT
CCTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAAGCTTCTACTTGTGCTTCTACCTGAG
GAATGTCACATAGTCTCAATTAGATCTACAGGATCAATTTCCTTCTTCCA
GATAACCTATTCAGCTAGCAACTAAAATTCCTGAAATGCTTCCCCCATGC
TAATGAGGCACTTCAGGTACCTAAGCTCCCAGCTAATAACGTTTGCCTAG
TCTGGATGTTCTTCCAAAAGTTGACCTGCCTCCTGATCACTGGTCCCAAT
GTGGTTACTCACTGTATTTACTCACAGGCCTTCCAACCCCCAATTCCATC
GCTGTCTTTGCTTCCACTGCCCTTGTAGACCCTATAGGCCTATGATCCAT
GAGAGCAGGGAGACCCACAGGAGTGACTTTCAGCATTACTTACTGTACTC
TTGGAAGGCAGTGAATCTGATCAATTTCAGGCACTTCCTGAAATTATTTT
GAATTGCTCACCTTCTGGCTTAATAAACTTCTCCTAAGGCTTAAGCGCTT
CCATCTCAGAGGACACAGCTACAGAACATTTGGGAACAAGCGAAGTCACA
TCATTCTTCTATGGACTCTGCTTCCGTTCTTGTCTTGGCTTTCCTTCGCC
GACGGACCGCCAATTTCGCTGCTGTTCGCTGCTTTTATTTTTTCTAACCC
CCTGAGCCCGTCTTAAAGCTTGCTTGCGGAAACTTTGATTGACTCTGCCT
GCCTCGCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_p18.b1 MSMg01no091_p18.b1 CHROMAT_FILE:
MSMg01no091_p18.b1 PHD_FILE: MSMg01no091_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:40 2005
         (334 letters)



>mm_chr3_32771185_32771918
          Length = 734

 Score =  617 bits (319), Expect = 0.0
 Identities = 328/331 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctacaatttaattgtcttagagagtatgttctatggatccacagacgactagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ggaattcctacaatttaattgtcttagagagtatgttctatggatccacagacgactagt 475

                                                                       
Query: 64  caaacttatttagtcacaccgattaactcactcattgactatagtcaaaaaacacaactg 123
           ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 caaacttatttagccacattgattaactcactcattgactatagtcaaaaaacacaactg 415

                                                                       
Query: 124 aacacaaaatacatagagatatgaaggtgcaacactatgcaagataagcagggtccctcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aacacaaaatacatagagatatgaaggtgcaacactatgcaagataagcagggtccctcc 355

                                                                       
Query: 184 tcttgtgactttaaagtctatcgtctcaaacagtcttggaagtgatgctagacttcagtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcttgtgactttaaagtctatcgtctcaaacagtcttggaagtgatgctagacttcagtg 295

                                                                       
Query: 244 gaggacctcagcagataccatcttagctgaggttcatttgtgtaacacaagctcttctca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gaggacctcagcagataccatcttagctgaggttcatttgtgtaacacaagctcttctca 235

                                          
Query: 304 aggatgctttcatgctcagaaaggaacaacc 334
           |||||||||||||||||||||||||||||||
Sbjct: 234 aggatgctttcatgctcagaaaggaacaacc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)