BAC Information

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BAC

Clone NameMSMg01-092E04
Chromosome3 (Build37)
Map Location 27,183,391 - 27,183,664
singlet/doubletsinglet
Overlap genenone
Upstream geneNlgn1, LOC229152, Spata16, LOC665258, Ect2, Aadacl1, LOC100040527
Downstream geneTnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092E04.T7 (MSMg01no092_e04.b1)MSMg01-092E04.TJ (MSMg01no092_e04.g1)
ACCAG309992AG309993
length716704
length of high quality
(start - end)
274 (45 - 318)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no092_e04.b1 PHD_FILE: MSMg01no092_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:03 2005CHROMAT_FILE: MSMg01no092_e04.g1 PHD_FILE: MSMg01no092_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTACCCAGTCGCCCACACGAGGCAAGAGTGCTCATAACACCCTGT
AACTCCAATCCCAGGAAATCTACCGTGCCTCTGGCCTCTGCAAGAACCTG
CCTGCATATACCCGGGCACACATAGAAATACCATTAAAATCAAAACACTC
TATCTTTGCAAACAAAACATGAAGAAAGTTTCTTGGCTAGAGCTGGAGAA
ATGGCTCGGTGGTTAAGAACACTGACTGTTCTTCCAGAGAGGTCCTGAGT
TCAAATCCCAGCAACCACACGGTGGCTCACAACCACCTACATTAGGATCT
GATGGCTTCTTCTGTCATGTAACCCCACCTGCCAAGAGCACTCATGCACA
AATTTTTAATATGTTTCACCCCATCTAACAAGAAAAAAGCCATCAAATAC
ACGAACTCCTATGTCTCCAGTCCCCAACAAGCTGAACAAATATATATAAT
CATGCATGACAACGTCTCACCAAAACCTCCTTACTGCTTCTAGAAACAAC
TTCATGCACTCTCTAAGCTTATACCTCCATCTCAATACATCTGACTACAC
ATTGCTTATTGCCCACCGTACTTTTCTCGCCAATCCAAAAACGTCTCCAC
GACCCTCTATCACCGCCCCTCGACCCCTCAACAGCTATCTTACCTTTAAT
CCTCGGCCTCCCCATT
AATTATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCCTGGTTTACAGTGTGAGTTCTAGGGC
AACCAGAAGAAAAAAAAAAAAAAAAACCCTGTCTCGAAAATAAAAAGACA
AAAAGAAAGGGGGGGGGCAAAATCTTCTTGCACTCTTGAAACCTTAAAAA
GAATTTTACAAATCAGGGCATCGCTCCAGACATTTTAATTGCCTTCTAAA
AATAAGTGCAAAGCTGAAGACATATTAACATTTTAAAATACAGTTGCCTG
GCTAGAGAGAGAGAGAGTTAAGAGTATCTGCTGCTCTTGCTAAGAATGAG
TTCAGATCCCAGTGATCTATCAGGCAGCTCATAACAGCTCCAGAGATCTG
GCGCCCTCTTCTGGCCCTACGGCGGATTTGTACTCATAAGTGCTCTTACC
CACAAAGTACCACTTATATAAACCTAATTTCATTCTTAATTAAAATATTC
TAAACCGACTCTGTATATCATCCCCACCCAGCCTTTTATGTAATTTAAAG
TGTTATCTTAAACTAAAACCCCATTTTATTCGAAGCAAATTTTATCACAG
CACCCCCTTTTAACCACCATGCCGCTGTCTTCCCCCCTTGATAATTCATT
CGACTTCTTCAATCCCCGGTTCATTTGTTTTTCTCTTCTCTTGCTCTTCT
GCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_e04.g1 MSMg01no092_e04.g1 CHROMAT_FILE:
MSMg01no092_e04.g1 PHD_FILE: MSMg01no092_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:03 2005
         (294 letters)



>mm_chr3_27183164_27183857
          Length = 694

 Score =  406 bits (210), Expect = e-118
 Identities = 264/292 (90%), Gaps = 19/292 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctggtttacagtgtgagttctagggcaaccagaagaaaaaaaaaaaaaaaaaccctg 60
           |||||||||||||||||||||||||||||||||||              ||||||| |||
Sbjct: 501 agcctggtttacagtgtgagttctagggcaaccag--------------aaaaaactctg 456

                                                                       
Query: 61  tctcgaaaataaaaagacaaaa-agaaagggggggggcaaaatcttcttgcactcttgaa 119
           |||| ||||||||||||||||| | |||   ||||||||||||||||||||||| |||||
Sbjct: 455 tctcaaaaataaaaagacaaaata-aaa---ggggggcaaaatcttcttgcactattgaa 400

                                                                       
Query: 120 accttaaaaagaattttacaaatcagggcatcgctccagacattttaattgccttctaaa 179
            |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 399 cccttaaaaagaattttacaaatcaggccatcgcttcagacattttaattgccttctaaa 340

                                                                       
Query: 180 aataagtgcaaagctgaagacatattaacattttaaaatacagttgcctggctagagaga 239
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aataagtgcaaagctaaagatatattaacattttaaaatacagttgcctggctagagaga 280

                                                               
Query: 240 gagagagttaagagtatctgctgctcttgctaagaatgagttcagatcccag 291
           |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 279 gagagagttaagagcatctgctgctcttgctaagaatgagttcagatcccag 228


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)