BAC Information

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BAC

Clone NameMSMg01-092G06
Chromosome3 (Build37)
Map Location 14,283,197 - 14,283,564
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092G06.T7 (MSMg01no092_g06.b1)MSMg01-092G06.TJ (MSMg01no092_g06.g1)
ACCAG310090AG310091
length732724
length of high quality
(start - end)
372 (38 - 409)334 (66 - 399)
definitionCHROMAT_FILE: MSMg01no092_g06.b1 PHD_FILE: MSMg01no092_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:14 2005CHROMAT_FILE: MSMg01no092_g06.g1 PHD_FILE: MSMg01no092_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
TCTGTTTCCACTTACACTTTTATCTTTGTGATTTCTTTGTGCTTTGGTTT
TAAGGAATATCTTAACACTACAAGGCAAACCCAATGTTTCTTAGGATTTG
TAAATTCATTGAGTATGGTTAAAGAATTTGTAAAATCTGTAACAAAATTT
GCCTTGAAACTTATAGCGAATGGCTTATGATTAAAATAGATAGCAAGCCA
TTCAAGTACTTTATTAATAATGGAGCAGACAAACAATTTTAAGATAAGAA
GAGATCTGACATGACTGGCAAGTAATCCCTGGGACCCAGTTCCTAGCCAT
ATAGGGTACCTCTCATGCATTTTTCACCAAATAGGCCTACAGGTGAGCAG
ACCTTAATGCAACCATTGACCTCATACACCCCCTGTAGCTCAAGTAGCCA
CTGATCTTCTTTTTTTTTTCCAATTTTTATTATGAATTTAGCTCATTTTA
TATTTCCAATGCTATACCAAAAGTCCCCCATAATCCATTCATCCCCACTC
TCCTGCCTACTCAACTCCCCCTTTTTTGGTCCTGGTGCTCTCCTTGTACC
TGTCCATATTCAATTTTGTATAGTCCCTCGGCCTCTTTCTTCCCATCGAT
GTCCCGACTAAGCCCTACTTTTTCCAATACTATGGCACCTCAACACCCTC
AACTTTTGGTGCCACCGGTTTAATTCTTAAAG
GTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTCATCAAACTTGTAGGATTACTGATTATATTAT
CATATCATCTGCAAGTAATGAGACTTTGACTTCTTCCTTTCCAATTTGTA
TATCTTGATCACCTTCAATTGTCTTATTATTCTAATTAAAACTTCAAGTC
CTATACTAAATAGATATAGAGAGAGTGGACAATCTTGCCTGGTTTATTTT
ACTGTCACCTTACCTGATTTTATTGTAATTGCTTTGAGTTACCCTCCATC
TAATTTGATGTTGGCTATAGTATTGCTGTAACTTGACTTTGTCATGTTTA
GGTTATTCCCTGGCAAACTTAATCTTTCTAGGACTTTTTTTTTTTTTTCT
TGAAAGGCCACTGAATTTTGCCACAGTAATTTTAATATCAAATTAGAAAA
TCAAATAGTGTTACATTCATTTTCAGTTTGCTTAAATGCCAGATTACTTT
TAATTGACTTTCCTATACTAAACTCACCCTTGCATTTCTTGTCTAAAGCC
CCTCCTGGTCTTGGTGAATGGCCTTTTCTACGAGTTTCTTAAACTTCAGT
TTTTAATTACACACCCTGCATATTTTTTACCTCGACTTTTGTATAGGACA
ATTGACTTGTAATTTCTTTTTGTGGGTTAACCCCTTTACGTTGCCCTAAA
AAAATGGTGTCCTGTTCTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_g06.b1 MSMg01no092_g06.b1 CHROMAT_FILE:
MSMg01no092_g06.b1 PHD_FILE: MSMg01no092_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:14 2005
         (372 letters)



>mm_chr3_14283173_14283944
          Length = 772

 Score =  588 bits (304), Expect = e-172
 Identities = 352/368 (95%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttctgtttccacttacacttttatctttgtgatttctttgtgctttggtttt 64
           |||||||||||||  | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaattcatttctggctactcttacacttttatctttgtgatttctttgtgctttggtttt 333

                                                                       
Query: 65  aaggaatatcttaacactacaaggcaaacccaatgtttcttaggatttgtaaattcattg 124
           ||||||| |||||| |||| || ||||||||||||||||| || ||||||||||||||||
Sbjct: 332 aaggaatgtcttaagactataatgcaaacccaatgtttctcagaatttgtaaattcattg 273

                                                                       
Query: 125 agtatggttaaagaatttgtaaaatctgtaacaaaatttgccttgaaacttatagcgaat 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 272 agtatggttaaagaatttgtaaaatctgtaacaaaatttgccttgaaacttacagcggat 213

                                                                       
Query: 185 ggcttatgattaaaatagatagcaagccattcaagtactttattaataatggagcagaca 244
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 212 ggcttatgattaaaatagatagcaagccattcaagtgccttattaataatggagcagaca 153

                                                                       
Query: 245 aacaattttaagataagaagagatctgacatgactggcaagtaatccctgggacccagtt 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aacaattttaagacaagaagagatctgacatgactggcaagtaatccctgggacccagtt 93

                                                                       
Query: 305 cctagccatatagggtacctctcatgcatttttcaccaaataggcctacaggtgagcaga 364
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 92  cctagccatatagggtacctctcatgcatttttcaccaaataggcctacacgtgagcaga 33

                   
Query: 365 ccttaatg 372
           ||||||||
Sbjct: 32  ccttaatg 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)