Query= MSMg01no092_i24.b1 MSMg01no092_i24.b1 CHROMAT_FILE:
MSMg01no092_i24.b1 PHD_FILE: MSMg01no092_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:27 2005
(371 letters)
>mm_chr3_148452304_148453074
Length = 771
Score = 574 bits (297), Expect = e-168
Identities = 306/309 (99%)
Strand = Plus / Minus
Query: 5 gaattctctggcttccctctgcttcagctgagcctcagctcatgcctgacacataaggtc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaattctctggcttccttctgcttcagctgagcctcagctcatgcctgacacataaggtc 250
Query: 65 aatatgtctggaaagactgacgatgtaaattagtacattgatatcattaataaaataaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aatatgtctggaaagactgacgatgtaaattagtacattgatatcattaataaaataaat 190
Query: 125 attaaagaaaagtaaccaaaaaagtaactgtttcttgagacagtatctcactatgtagcc 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 189 attaaagaaaagtaaccaaaaaagtaactgcttcttgagacagtatctcactatgtagcc 130
Query: 185 ctggctgacctggaacttgctatgtagatcaggctggccttgaactttcagagttcactt 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ctggctgacctggaactcgctatgtagatcaggctggccttgaactttcagagttcactt 70
Query: 245 gcctttgcctcccaagaagtgggattaaaggtagattctaccacacctgcccactagctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gcctttgcctcccaagaagtgggattaaaggtagattctaccacacctgcccactagctc 10
Query: 305 ttctttctc 313
|||||||||
Sbjct: 9 ttctttctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_i24.g1 MSMg01no092_i24.g1 CHROMAT_FILE:
MSMg01no092_i24.g1 PHD_FILE: MSMg01no092_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:27 2005
(390 letters)
>mm_chr3_148303692_148304481
Length = 790
Score = 667 bits (345), Expect = 0.0
Identities = 387/419 (92%), Gaps = 29/419 (6%)
Strand = Plus / Plus
Query: 1 aactcgctttggtcttaaatcatccaactgttggcagccagtcccacagtctaccgggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aactcgctttggtcttaaatcatccaactgttggcagccagtcccacagtctaccgggag 231
Query: 61 taagtgaggagggagagattaaggacaggacactttaaagcaaaa----ccagagcactg 116
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 232 taagtgaggagggagagattaaggacaggacactttaaagcaaaacgagccagagcactg 291
Query: 117 tttcatctggatgacactggtcttggatgaggttaggtgagggagggaactcactgtgat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tttcatctggatgacactggtcttggatgaggttaggtgagggagggaactcactgtgat 351
Query: 177 gatcaggaaaagaaatattccaggcaggaaggaagggtcaagggctgtctta-------- 228
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 352 gatcaggaaaagaaatattccaggcaggaaggaagagtcaagggctgtcttatttttttt 411
Query: 229 -----------------ttttttttttactacttggggcctctgttgagcaagggcatat 271
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tttttttttttttttttttttttttttactacttggggcctctgttgagcaagggcatat 471
Query: 272 agaaatgcgcattttaatgagggtctagactctgctagtcccattttggtttctcctttc 331
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agaaatacgcattttaatgagggtctagactctgctagtcccattttggtttctcctttc 531
Query: 332 ccacttctgacttacaaagaacaatgataaacaatgagtctctgtgtcagcccttggca 390
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ccacttctgacttagaaagaacaatgataaacaatgagtctctgtgtcagcccttggca 590
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space: 297561
Effective search space used: 297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
