BAC Information

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BAC

Clone NameMSMg01-092M01
Chromosome3 (Build37)
Map Location 8,710,364 - 8,710,518
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2, Hey1
Downstream geneLOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886, Zbtb10, Zfp704, Pag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092M01.T7 (MSMg01no092_m01.b1)MSMg01-092M01.TJ (MSMg01no092_m01.g1)
ACCAG310365AG310366
length800833
length of high quality
(start - end)
157 (102 - 258)45 (188 - 232)
definitionCHROMAT_FILE: MSMg01no092_m01.b1 PHD_FILE: MSMg01no092_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:43 2005CHROMAT_FILE: MSMg01no092_m01.g1 PHD_FILE: MSMg01no092_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTCTTTTTTTTTCTTCCTNTTCTCCCCCTTCACCTTATTAATT
ANCTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTCCTGTTACCCCAGCCACCATGTCCTTAGCCAATGTCA
GCACCATCAGAATAGATACCCTGTCAGGAGACGTTTACATTGTTCCCAAG
CCTGTTCGCAGGTGGCCATGCAAAGATACAGTTCCTAATCTGGGTTTTTC
TGAAAGAGAAAGAAAATAGCCCCAGAACGGTACAGGGGTGCTGAGTTCTC
TTTTTGATAAATAAGCTCCTTTTGTCCCATATTCTGCCTGTCTTTTTACA
CTCAAGAAATTTTCGCAACCTGACAGTTACAAAATATCCGTGTTTCTAGA
CTCTCAGTTCCTACCGAAAGGTCTCATCCCTTGCCTACATACCTCATTGC
TCCTCTTGCCATCTTCATTTACTCCACCTGATAATAATTCTCCATCGTGC
ACATCATGTACGAAATCATATACGCCTCACTAGCTTCCCAGCACGCAATC
ATCGGCCTCTTTCCCATTCTACTTTACTCCTGACGTTCCCCCTCACTCCC
GCCTGTCACCTAGTTACTCCCCAACTTGCCCGCCCTTACCTGTTTTCACT
CCAGTCGCGTCCTTCATCCTTGCAATTCCCTCTGTACCCAATTTTCTCGC
TTTGTCCAAAAAGATTAACTTTCCAAACGCCTTAACTCCCTTTATGCCAA
CTCTTACAAGTCACTCCTAAACCTGTTCCCTTACCCCTCTCTTTTCTTTA

CTTTTTCTTCCTTNCCCCTTTTTTTTTTCCTTCTTTTTTTCCCTTTTTTC
CCTTATCTCTATGATATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACTCATAGCTGCCCA
AGATGCTGAGGACAAGTGACAGTTAATGTATTCCCCCCCTGAACAGGACA
TTTACACTGTCTCTTCTATGGCTCAGGGGACATGGAACGAATAGGGAATG
CGTAACAGTCATATAAAGGTGAAGGCTGTGACATGCAGACTTGTGATCAT
GAACTCACATCATTTGTAGAGAATCGGCACCTGCCTGCATACAGATGCAG
ACACTCACAGCAGTCAGCGTCCCTGTCAGCAGTTGTTTACGACAGGCTCA
TGCGTTCACGGGATACTTCTCCGTATTGTTGAATTACCGTTCATTGTCTG
TCTTCGCCTCGTCCCTCATGTTTCCCCGCCCTGTGCGTTCCACTGATTCT
TTTTCACTTTTTACCACCCGCTACTTTTGCTTTCCACATCTACTGTAATA
CTGATTCACCACTATCTTACTAATTCCCCAAAAACCTCACCCCTTAACTC
AATTGCACCACCAACCTGTAACCACTAGAACCAATGCCTATGCCAATGTT
TTACCTCGCCCTTTTCAACCCCATAACACATGTTTTTGCCAATGATTAGT
TCCTTTAAGGTTGTACTTTTTTATACTGTTCCCACTACTTTATCATTATC
CCATTGCCTCTCCCTTACCTCCGTATCCCCCTCCTTTCACGCTTCTTTTT
TCTTCCTTCCCCTTTCCCCTTGTTTTCCGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_m01.b1 MSMg01no092_m01.b1 CHROMAT_FILE:
MSMg01no092_m01.b1 PHD_FILE: MSMg01no092_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:43 2005
         (157 letters)



>mm_chr3_8710161_8710718
          Length = 558

 Score =  240 bits (124), Expect = 3e-68
 Identities = 147/158 (93%), Gaps = 7/158 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcctgtt----accccagccaccatgtccttagccaatgtcagcaccatcag 59
           |||||||||||||||    |   |||||||||| |||||||||||| |||||||||||||
Sbjct: 204 ggaattcctcctgttaaaaa---cagccaccatctccttagccaatatcagcaccatcag 260

                                                                       
Query: 60  aatagataccctgtcaggagacgtttacattgttcccaagcctgttcgcaggtggccatg 119
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 261 aatagataccctgtcaggagaggtttacattgttcccaagtctgttcgcaggtggccatg 320

                                                 
Query: 120 caaagatacagttcctaatctgggtttttctgaaagag 157
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagatacagttcctaatctgggtttttctgaaagag 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 558
Length adjustment: 8
Effective length of query: 149
Effective length of database: 550
Effective search space:    81950
Effective search space used:    81950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)