BAC Information

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BAC

Clone NameMSMg01-092N08
Chromosome3 (Build37)
Map Location 12,006,295 - 12,006,688
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383826, EG667978, LOC667999
Downstream geneEG621965, LOC100039798, EG668033, LOC668037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092N08.T7 (MSMg01no092_n08.b1)MSMg01-092N08.TJ (MSMg01no092_n08.g1)
ACCAG310427AG310428
length749747
length of high quality
(start - end)
400 (107 - 506)395 (136 - 530)
definitionCHROMAT_FILE: MSMg01no092_n08.b1 PHD_FILE: MSMg01no092_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:49 2005CHROMAT_FILE: MSMg01no092_n08.g1 PHD_FILE: MSMg01no092_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCCCCCCCCCCNCNCCCCCCC
TCCCCNCCCCGTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTGTTCACCTCTGAGCCATTTTTTAATGGGGTT
ATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATA
TTAGTCCCCCATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGCATTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTG
CAATTTTATGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCA
TTGCTGTTCTATTCAGGAATTTTTTCCCTGTACCCATATCTTCGAGGCTT
TCCCCTACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTGCTCTGTAG
TACAGTTTTAGGTCCGGCATGGTGATTCCACCAGAGGTTCTTTTATTCCT
TGAGAAGAGTTTTTGCTATCCTTGTTTTTTTGTTATTCCAGATGACACTG
CCGATTGCCCTTTCTAATTCTTTGAAGAATTGAGTTGGTATTTTGATGTG
TATTTGCATCGAATCTGTAAATTGGTTTTGGAAAGATGGCCATTTTTTAC
AAGGTGAACCTGCCTATCCTTGAGCAAGGTGAGATCTTTCCTCCTTCTGG
AATCTTCATAAAATTCTTTCCTTTACAATCCTGGAATTTCTTATCTTAG
NNNNNNNNNCCCCNNNNNNTTTTCCCCNNCCCCCCCCCCCNCCCNCCCCC
TCCACCACCATCTATGCTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAAATTTTCTGT
CCTACTTTCTAGACTGTGACCTCTCAGTGTCTAACTCCAGAAGTCTCTTG
AAACAGCTACTACAGCTCTGATTTCTAAGCCATTGGCTTCTCAGAAGACA
TGAAGAATTCTGGCCCATGTTCATTTCACCAATTTCAAACTAGTGAGACT
TTTATTCATCTAGCTGTCTACCTCCAATCCCCACTAAAAGGCTTTACGGT
TTTTATTTGGTTTCACCTTAATACAGCATCTTCATATTATTTTGAAGGTT
ATCAGAAACTCATTTTCCACTTTTGCTATCTTACTTGTCTCACCACTGTC
ATGGAATTTATATTCATCTCTGTGTTCCTCTTTAATATAAAACGGTTTTA
ACATTATACAACCAGAGATAATTTTGTGGGAATGTCCCAAGTTTTATGCA
ATCCATGACAAGCACTTGTAATTGCAAAGATGTAATTATTATTTGGGCAC
TCTTCAAATTATTTTTCTCTAAAATGTTATTATAGTTGACTTGTGCAACT
ATGCAAGGCCGTATCTGTCCTTTTACTGTCATCTCACAAGCCTTCTGTCT
CTCTCTGTCTAAATTCTCATGCCCCTTCATGAATTCCTTTCAACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_n08.g1 MSMg01no092_n08.g1 CHROMAT_FILE:
MSMg01no092_n08.g1 PHD_FILE: MSMg01no092_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:49 2005
         (395 letters)



>mm_chr3_12006095_12006888
          Length = 794

 Score =  632 bits (327), Expect = 0.0
 Identities = 378/395 (95%), Gaps = 1/395 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaaattttctgtcctactttctagactgtgacctctcagtgtctaactccagaagtc 60
           |||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 201 aatacaattttctgtcctactttctggactgtgacctctcagtgtctaactccggaagtc 260

                                                                       
Query: 61  tcttgaaacagctactacagctctgatttctaagccattggcttctcagaagacatgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tcttgaaacagctactacagctctgatttctaagccattggcttctcagaagacatggag 320

                                                                       
Query: 121 aattctggcccatgttcatttcaccaatttcaaactagtgagacttttattcatctagct 180
           ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct: 321 aattctggcccatgttcatttcaccaatttcaaactaatgagacttttgttcatctaggt 380

                                                                       
Query: 181 gtctacctccaatccccactaaaaggctttacggtttttatttggtttcaccttaataca 240
           |||||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct: 381 gtctacctccaagccccactaaaaggctttatg-tttttatttggtttcaccttaatata 439

                                                                       
Query: 241 gcatcttcatattattttgaaggttatcagaaactcattttccacttttgctatcttact 300
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 ccatcttcatattattttgaaggttatcagaaactcattctccacttttgctatcttact 499

                                                                       
Query: 301 tgtctcaccactgtcatggaatttatattcatctctgtgttcctctttaatataaaacgg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 500 tgtctcaccactgtcatggaatttatattcatctctgtgttcctctttaatataaaactg 559

                                              
Query: 361 ttttaacattatacaaccagagataattttgtggg 395
           |||||| ||||| |||||||||| |||||||||||
Sbjct: 560 ttttaaaattatgcaaccagagacaattttgtggg 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 794
Length adjustment: 9
Effective length of query: 386
Effective length of database: 785
Effective search space:   303010
Effective search space used:   303010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)