Query= MSMg01no092_p21.b1 MSMg01no092_p21.b1 CHROMAT_FILE:
MSMg01no092_p21.b1 PHD_FILE: MSMg01no092_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:02 2005
(293 letters)
>mm_chr3_108369261_108369953
Length = 693
Score = 551 bits (285), Expect = e-161
Identities = 291/293 (99%)
Strand = Plus / Plus
Query: 1 agagatgagctcagtctggactatgcatggtaaaagccagcattccttgggaccttgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagatgagctcagtctggactatgcatggtaaaagccagcattccttgggaccttgtga 260
Query: 61 agccggctactgtctatcaataggagtcatctcctagcaatcaaagcacatgaaggcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccggctactgtctatcaataggagtcatctcctagcaatcaaagcacatgaaggcctc 320
Query: 121 caggccccctcagtacctgttagatagttcaaagtccatcctagcatccgagctcttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggccccctcagtacctgttagatagttcaaagtccatcctagcatccgagctcttctc 380
Query: 181 acttcttccattactctaaacttcctctagttcatgggcttgcttccctcctgattgcta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 acttcttccattactctaaacttcctctagttcatgggcttgcttccctcctgacagcta 440
Query: 241 cttatccttcttgaaatgcagcatttttcactattctccccttaggttcctgc 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttatccttcttgaaatgcagcatttttcactattctccccttaggttcctgc 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no092_p21.g1 MSMg01no092_p21.g1 CHROMAT_FILE:
MSMg01no092_p21.g1 PHD_FILE: MSMg01no092_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:02 2005
(514 letters)
>mm_chr3_108498195_108499109
Length = 915
Score = 911 bits (471), Expect = 0.0
Identities = 504/515 (97%), Gaps = 2/515 (0%)
Strand = Plus / Minus
Query: 1 tcatcgtaaagcttgtctcctcatgaccccctctcggttcagacccatgctagtgtctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 578 tcatcgtaaagcttgtctcctcatgaccccctctcggttcagacccatgttagtgtctcc 519
Query: 61 tcctccttcccaggcactgaggcctcatggttagcgca-gtgtccttgtctagatgtgca 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 518 tcctccttcccaggcactgaggcctcatggttagcgcatgtgtccttgtctagatgtgca 459
Query: 120 gtgtttcctgtagctggccactctcacctgcctcctccacacgcaagctgcacacagctg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtgtttcctgtagctggccactctcacctgcctcctccacacgcaagctgcacacagcta 399
Query: 180 gctctccactcacagctctttgcgctcctcttcatgctccattcgacacatctgcggtac 239
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 398 gctctccactcacagctctttgtgctcctcttcatgctccatccgacacatctgcggtac 339
Query: 240 ccaggatgccctccctcctccttccctccctcgaagttcaccatctatcatagaaacaga 299
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 338 ccgggatgccctccctcctccttccctccctcgaagtttaccatctatcatagaaacaga 279
Query: 300 tcttatgcttcttcctcctctccaggctctagttcagtgccttcaccaggacattttaca 359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 278 tcttatgcttcttcctcctctccaggctctagttcagtgccttcagtaggacattttaga 219
Query: 360 atggtagagaagttctcagggcaggaagatgctcagcagttaagaataccggctgcttct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atggtagagaagttctcagggcaggaagatgctcagcagttaagaataccggctgcttct 159
Query: 420 ccagaaaacccaggttccattcccaggaacaacatgacatccaacacctgcattcacagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ccagaaaacccaggttccattcccaggaacaacatgacatccaacacctgcattcacagt 99
Query: 480 taaaatttggttctttaagaaggtgagcaaatcag 514
||||||||||||||||||| |||||||||||||||
Sbjct: 98 taaaatttggttctttaag-aggtgagcaaatcag 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space: 456120
Effective search space used: 456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
