Query= MSMg01no093_b03.b1 MSMg01no093_b03.b1 CHROMAT_FILE:
MSMg01no093_b03.b1 PHD_FILE: MSMg01no093_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:12 2005
(209 letters)
>mm_chr3_38590274_38590881
Length = 608
Score = 397 bits (205), Expect = e-115
Identities = 208/209 (99%), Gaps = 1/209 (0%)
Strand = Plus / Plus
Query: 1 agcacaggaacttccttccctcccttcccctcccttgtcctcccctcccctcccttccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcacaggaacttccttccctcccttcccctcccttgtcctcccctcccctcccttccct 260
Query: 61 tcctctcccctctcccttttgtttcttgtttccctctttccatccccactttctttctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctctcccctctcccttttgtttcttgtttccctctttccatccccactttctttctct 320
Query: 121 ttctccttttttggttaatgtagcactagtactacagaaatagcaaaaactaaaaaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctccttttttggttaatgtagcactagtactacagaaatagcaaaaactaaaaaaaaa 380
Query: 181 aaaaaaaaacagtgtttgcaagtcttcta 209
|||||||| ||||||||||||||||||||
Sbjct: 381 aaaaaaaa-cagtgtttgcaagtcttcta 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 608
Length adjustment: 9
Effective length of query: 200
Effective length of database: 599
Effective search space: 119800
Effective search space used: 119800
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no093_b03.g1 MSMg01no093_b03.g1 CHROMAT_FILE:
MSMg01no093_b03.g1 PHD_FILE: MSMg01no093_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:12 2005
(380 letters)
>mm_chr3_38660368_38661147
Length = 780
Score = 696 bits (360), Expect = 0.0
Identities = 375/380 (98%), Gaps = 1/380 (0%)
Strand = Plus / Minus
Query: 1 ttttc-ccatgagaagctataatctgatcatttcttatacaaaataagcttcaaatcaat 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttttcaccatgagaagctataatctgatcatttcttatacaaaataagcttcaaatcaat 680
Query: 60 ttaagagacaaatatgtaactaccaagaatatttaatagtccttggaaaaacacctgcac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttaagagacaaatatgtaactaccaagaatatttaatagtccttggaaaaacacctgcac 620
Query: 120 agcaaacaaacaaacaaacaaacaaacaaaaaacaaacaacaacaaaaatctgttaaaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agcaaacaaacaaacaaacaaacaaacaaaaaacaaacaacaacaaaaatctgttaaaca 560
Query: 180 gcatttgaaatgtccttctgccagcacatatctttgtgcagtcacccttgaagatactac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gcatttgaaatgtccttctgccagcacatatctttgtgcagtcacccttgaagatactac 500
Query: 240 agtccattcttattgcgtagaagatgaagacagtgtgctgacaatttccaccgtgtgttc 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtccattcttattgtgtagaagatgaagacagtgtgctgacaatttccaccgtgtgttc 440
Query: 300 actgaggtaaatgtggatttaaatatacttatatattgaaaattttgtaaacataaaaat 359
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 439 actgaggtaaatgtggatttaaatatacagatatattgaaaattttgtaaacataaaaat 380
Query: 360 gttcataaaataaagacata 379
||| ||||||||||||||||
Sbjct: 379 gtttataaaataaagacata 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space: 286041
Effective search space used: 286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
