BAC Information

Click to search

BAC

Clone NameMSMg01-093B15
Chromosome3 (Build37)
Map Location 61,508,864 - 61,670,239
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093B15.T7 (MSMg01no093_b15.b1)MSMg01-093B15.TJ (MSMg01no093_b15.g1)
ACCAG310631AG310632
length1,1051,202
length of high quality
(start - end)
164 (24 - 187)318 (115 - 432)
definitionCHROMAT_FILE: MSMg01no093_b15.b1 PHD_FILE: MSMg01no093_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:17 2005CHROMAT_FILE: MSMg01no093_b15.g1 PHD_FILE: MSMg01no093_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,670,076 - 61,670,239)(61,508,864 - 61,509,165)
sequence
CCTACAGAGTCTGAAAGGCCCTCAATAATATACAGCTGAGTCATGGTATC
TGTGTATCTATAGGTGGCCAAGAGAAAGAGCTGGTTATGCGGCCCCTTCG
CTCCCCTCTATTTGCAGTTAGGGAGAGTCTTGTGGTCATTTTTGCCCTAT
GAAATGCTAGTATGAAACTTGGATGATGTGACTCAGCAATCATGCCATAC
TACAGAAATGTACATCTGTGATAGTCCTTCATTTCCACTGTGCCATCCAT
AGCTTATAAGGCTGTGACAGTATTACAGCTGCAATTTTTTTTCTATAGAA
TAACCAGCATGAAATAACCATGCTAGATACTACCCCTTCTATCAAATAAA
CTCCCTCATGTGTTTTTAATGTTTCTTTTGAGACTTCATTATAATTTCAT
ACTTCTCGTTTCTAATCTATCCCATACTACCTTATTTGTTGTTATACTGA
ATCTTGGAATTCTATCATTATAGTTCTACTTGCTCTTTTCCTGTTTTTCC
CTCTTTTCTTATCCTATTATCTTGATATTTGCTTATCTTTATCTACATTT
TTTATCTTTCCTCTACTTTTTATTTTACTCTGTGTTTCCTCTTCTTATTT
CTTATTATTTTTCATCAACCCTTTACTCTTCTTTTCTTCTCTTTTTTTCC
TTTTCTCTCTATTTAATCCCACCTTATTTGTTCTTTTTCATCTTTATCTT
TCTCTTTTCTCTTTTTTATTTCTTTTCTTTTTTTTTCTACTTTTACTTTT
TCTCTTTCTTTTTTTTTATTTTTATTTCCTCTACTATTTCATTTTTTCTT
TCCCCCCTTTTTTTTCTTTTTTCTTTTATTTTTCTTCTTTTTTTCTTTTT
TCTTTTCCCCCTATTTTTTTATATTCTTTTCTCTTTTTCCTTTTTTTTCA
TTCTTTTTCTTTCTTTTTTTTTCTTTTTCTTATCTTCTTCTCTTCTTTTT
TTTTTTATATTTTCTATTTTTTTCTTCTTTCTTTATTTTTTTTTCACTTC
TTTTCTTTTATTTATTCTTNCTTATTTTTATCTCTTTTCTCTTTTATTCT
TTTTTCTTTCCACCTTTATCTTTTCTATATTCTCTCTTTTCTATCTTTAT
TTCTT
TTTTCTAATGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCACTTTACTCCTGCAAATTGTCTTCTGACTTCTACAA
ATGTGCCCTTGAATGTGTGTACTGCACCCCAGTGTGTTTGTGTACACACA
CTTATGTAATAAATACTTTTAAAAATGGCTTTAAAATTTACTTTGTATTT
AGTTTAAATTAAGAAATATTTCAAACATAATATTATGAAATATGCTAGAC
TAGTAACATGCACACCAAGTCAGATAGAGATTAACATTTTAATATATTTT
TTCTTCTGCTACACTAGGAGTTGAATCCAGGACTTCGTTCACACTCATAG
TAATTACTTTTTAACTGGACGCACGCAAGTTTGGTATGTATAATTTTTTA
AGTGTAACGTTCTCTTGATGGCTTGAACAAAAACAAGTGACAGTCTTTAT
CTGCCCACCCTACAAGTTTATTTTATTATAGATTAGAATAATGCTATCTA
ATTATTTCCTGCTCTCATTTGTTTGGAATTACTTCATCTATCCTTTTTAC
CTTAAGATCCCGTTTACTCTTCTTTATATTTAACGTCTATTTTCTTATTA
TCTTTATATTTATGGTTTCTTATTCTCTACTTTAATTATTCATCTTTTGA
ATTTTGCCTTTGTATTGTTATTATCTTGCCATTCTTATTTTTTCTCTATT
TTCCTATATCTATATTTCTTGTTTTTTTTTCAATTTCTTTGTTTTTTTTA
TTCTTTTTTCTTTTTTATCTTTTTTTTTTTTTTTCTCCTTATTTTTTTTT
ATTATTTCTTCTTAATCTTATCTTTTTCTTTTTTTTTTTGTCCCTCTTTT
CCTTTTTTTTTATTATTTCTTTTTTTTTTTTTTTCTTCTTCCTTTTTTCA
TTTTTTCTTTTTTTTATTTTATTTTTTACTTTTTTTCTATTCTTTTTTTT
TTTTTTTTTCTTTTTTCTCTTTTTTTTTTTATTATTTTTTTTTTATTTTC
TCTTTTTTTACTTTTTTTCTTCTTTTTTTTCTTTTTAATTCTCTACTATT
TCTTCTTNTATTTTTTTTTTATTTATTCTTAATTCTCTTTTTTCTACTTT
TTTTACTCTACTTTTTCTTTTATCTTCTATTTTTCTTCATTTTCTCATTA
CTCTTTTTATCTTTTTTTCTTTCTACTTTGTCATTATTTTCTTCTTGTAT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_b15.b1 MSMg01no093_b15.b1 CHROMAT_FILE:
MSMg01no093_b15.b1 PHD_FILE: MSMg01no093_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:17 2005
         (164 letters)



>mm_chr3_61669876_61670439
          Length = 564

 Score =  310 bits (160), Expect = 4e-89
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataatatacagctgagtcatggtatctgtgtatctataggtggccaagagaaagagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aataatatacagctgagtcatggtatctgtgtatctataggtggccaagagaaagagctg 305

                                                                       
Query: 61  gttatgcggccccttcgctcccctctatttgcagttagggagagtcttgtggtcattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttatgcggccccttcgctcccctctatttgcagttagggagagtcttgtggtcattttt 245

                                                       
Query: 121 gccctatgaaatgctagtatgaaacttggatgatgtgactcagc 164
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 244 gccctatgaaatgctagtaggaaacttggatgatgtgactcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no093_b15.g1 MSMg01no093_b15.g1 CHROMAT_FILE:
MSMg01no093_b15.g1 PHD_FILE: MSMg01no093_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:17 2005
         (318 letters)



>mm_chr3_61508648_61509365
          Length = 718

 Score =  522 bits (270), Expect = e-152
 Identities = 294/302 (97%)
 Strand = Plus / Plus

                                                                       
Query: 17  agtgtgtttgtgtacacacacttatgtaataaatacttttaaaaatggctttaaaattta 76
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 217 agtgtgtttgtgtacacacacttatgtaataaatacttttaaaaatggttttaaaattta 276

                                                                       
Query: 77  ctttgtatttagtttaaattaagaaatatttcaaacataatattatgaaatatgctagac 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctttgtatttagtttaaattaagaaatatttcaaacataatattatgaaatatgctagac 336

                                                                       
Query: 137 tagtaacatgcacaccaagtcagatagagattaacattttaatatattttttcttctgct 196
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tagtaacatgcacatcaagtcagatagagattaacattttaatatattttttcttctgct 396

                                                                       
Query: 197 acactaggagttgaatccaggacttcgttcacactcatagtaattactttttaactggac 256
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 397 acactaggagttgaatccaggacttcgttcacactcatagtaattaatttttaactggac 456

                                                                       
Query: 257 gcacgcaagtttggtatgtataattttttaagtgtaacgttctcttgatggcttgaacaa 316
           ||||||||||||||||||||||| |||  |||||||| ||||||||||||| ||||||||
Sbjct: 457 gcacgcaagtttggtatgtataactttagaagtgtaatgttctcttgatggattgaacaa 516

             
Query: 317 aa 318
           ||
Sbjct: 517 aa 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)