Query= MSMg01no094_d17.b1 MSMg01no094_d17.b1 CHROMAT_FILE:
MSMg01no094_d17.b1 PHD_FILE: MSMg01no094_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:47 2005
(660 letters)
>mm_chr3_18010847_18011907
Length = 1061
Score = 1210 bits (626), Expect = 0.0
Identities = 647/654 (98%), Gaps = 1/654 (0%)
Strand = Plus / Minus
Query: 8 gaattccacctttc-aactaccattgacagagccttctatgtgtatcatacatttattga 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaattccacctttcaaactaccattgacagagccttctatgtgtatcatacatttattga 802
Query: 67 gtgactgggattaaaaggcatgtggctctttaagccagtgaacaacttgtcagaatggaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgactgggattaaaaggcatgtggctctttaagccagtgaacaacttgtcagaatggaa 742
Query: 127 gactgctcacttctttcctgcagattgtctgctagtccactcactctctttatagagtcc 186
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 741 gactgctcacttctttcctgcagattatctgctagtccactcactctctttatagagtcc 682
Query: 187 cagcttaccattgggagatctccctgtttggttccttttctttttctcctttccacttaa 246
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcttagcattgggagatctccctgtttggttccttttctttttctcctttccacttaa 622
Query: 247 tgggcaagtacccggcttctttctcactttcttgaaaatcaatcactatctcttagacca 306
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggcaagtacccggcttctttctcgctttcttgaaaatcaatcactatctcttagacca 562
Query: 307 catattagagattgacatcacaataatcaaatccattcctgaggtctgctttctgtgaag 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catattagagattgacatcacaataatcaaatccattcctgaggtctgctttctgtgaag 502
Query: 367 tgtcctttttacttactcctatgaacttaccaagttcatatgtatccaaactctcaatga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 tgtcctttttacttactcctatgaacttaccaagttcatatgtatccaaactctcaacga 442
Query: 427 tttcatttagccaatgactcaaaggatggaagggttcttccaaagctgggtaccacaaag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcatttagccaatgactcaaaggatggaagggttcttccaaagctgggtaccacaaag 382
Query: 487 tttggtaaagataaggagaaagggctgacagctgatctgcttacacatagagtggataaa 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggtaaagataaggagaaagggctgacagctgatctgcttacacatagagtggataaa 322
Query: 547 cacccacactcaaaatcaactgcaagcataaggagagcaggagaaacagctctactttat 606
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacccacactcacaatcaactgcaagcataaggagagcaggagaaacagctctactttat 262
Query: 607 agaccccctctctcagtccttgtgtgttgctgaaaagttaaagtttatttgtct 660
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaccccctgtctcagtccttgtgtgttgctgaaaagttaaagtttatttgtct 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no094_d17.g1 MSMg01no094_d17.g1 CHROMAT_FILE:
MSMg01no094_d17.g1 PHD_FILE: MSMg01no094_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:47 2005
(438 letters)
>mm_chr3_17949834_17950671
Length = 838
Score = 754 bits (390), Expect = 0.0
Identities = 422/438 (96%), Gaps = 9/438 (2%)
Strand = Plus / Plus
Query: 1 ttcatgaactctctccgctacctttccatttatttcggccgtgaagcttaggtcgtcctc 60
|||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct: 201 ttcatgaactctctccgctacctttctatttatttcagccatgaagcttaggtcgtcctc 260
Query: 61 taggtgttaccaatgataactaggcacaatattattctcttattacacagactgcttaac 120
|||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 261 taggtgttaccagtgataactaggcaccataatattctcttattacacagactgcttaac 320
Query: 121 cttgaaagtcaccaaaattggaaacgtccccacaacgtgcttgaaccggtttgaatggat 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgaaa---------attggaaacgtccccacaacgtgcttgaaccggtttgaatggat 371
Query: 181 cctggaaaggctgcttttggaggctgaaggtttctgtccagcatctattcgaacttaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cctggaaaggctgcttttggaggctgaaggtttctgtccagcatctattcgaacttaaac 431
Query: 241 tacttccagattagtgaggaacaatgccctttgttggaatcgattaagaggaactaggta 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 432 tacttccagattagtgaggaacgatgccctttgttggaatcgattaagaggaactaggta 491
Query: 301 ggtaggtgaagtttggagcagaccccaacaattccagatcggaatttggggaactgggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggtaggtgaagtttggagcagaccccaacaattccagatcggaatttggggaactgggtt 551
Query: 361 gagactttggagggctgccagaactgtttcatctcgaaccactgcctggttccttcttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gagactttggagggctgccagaactgtttcatctcgaaccactgcctggttccttcttct 611
Query: 421 tccggagggaatctcttc 438
||||||||||||||||||
Sbjct: 612 tccggagggaatctcttc 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
