BAC Information

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BAC

Clone NameMSMg01-094K16
Chromosome3 (Build37)
Map Location 80,886,453 - 80,886,733
singlet/doubletsinglet
Overlap genePdgfc
Upstream geneEG626797, Gria2, Glrb, EG626841
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094K16.T7 (MSMg01no094_k16.b1)MSMg01-094K16.TJ (MSMg01no094_k16.g1)
ACCAG311771AG311772
length654699
length of high quality
(start - end)
287 (32 - 318)427 (55 - 481)
definitionCHROMAT_FILE: MSMg01no094_k16.b1 PHD_FILE: MSMg01no094_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:25 2005CHROMAT_FILE: MSMg01no094_k16.g1 PHD_FILE: MSMg01no094_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATGATCCGCGAATTCAAAGATCTCCTGAAATACGCGGGGGAGGGGAAAGA
AAGAATGCACAGCCTTAGAATTCTGACCATGAGAACTTAAAATCAGTAAG
CATGGCTCCTTTTGTGTGGTGGGTACAATAGCATGTAGCTCTTGCTATTA
AACATTTTTTCCGTTCCTTCTCAGGCCAAATCATGGAGAATCTGAAAAGA
CAATAGTGACAATCCAAAGCCAGTTAGATGTCTCTGACTATAGGAAAAAA
AGAGTGTAAACTTTGTACTGCTAATTATTCTTGAATGATAGGCAGAGATC
CAGGGAGGCTCATGTTCTCCTGCATGATGCTCACTCTCTGGTTACTGCTT
CTGCTTCAGGATGCCTGACCTGCCAGAAGAAGAGAAGCATGTTTGTTTAT
TCCCCGTTTTTTACTTTTCCGTCTTACTCTCGCAATTCTTGTCATCCATC
ATAACTTTTATGCACTTATGATCACCATAATGGCCAACGTCTTCTTGAAG
TCTATATATGTCACGTTCTCCTGTTTTATAGTACCTCTTCTCTTTCTGAT
AACCCAACATGTCCCCAGTCCCATTACCCTTCCTACCACTCCTAACTTTA
ATTATGCTATCGATCCATCTTTAACTAATGATTACATACCTCTCTCCTAT
CATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGACTAATACAGATGCAGATACTCACAGCCAGATATTGAACTGAGC
CCCCGGACCCCAATGGAAGAGCTAAGGAAAGGGCTGAAGGAGGGGAAGGG
GATTACAACCCTATAGGAAGAACAATATCTACTAACCAGGCCTCCATGAG
CTCCCAGGAACTAAACCACCAACCAAAGAGTATACATGGGAGGGACCCAT
GGCTCTTGATGCATATGAAGAAGAGGATAGCCTTATCTAGCATTAATGAA
AGGGCAGGTCTTGTGGAAACATAAAAGGATTCTTGAGAACATAAATGATT
AAATGAATGTATAATCAACATGAAAGAAATCATCAAGGAAAGCTTTAGGA
TTGTTTTTATTGATTATTTGGGAAGTCTACAACAGGAACCCCAATAATAC
TCACTTTTCAGTCCTTCCATGCCTGTGCATGGAAGAGGAGAAGGAAAAGG
AGAATAACAAGAATAAGGGACGATTTCGGAACAGGAGAAGCAGGGAGAGG
AGGAAGAGACAGAGTACGAGGAGGGAGAGCAGGCCGCATCCCTTTCCCCC
CCTTCTTTCCCCCATTTTCCCCCCCCGTTCCTCTCCCTGCCGTTCCTTCC
ACTTACCGTCCCTTTTATTTCTTTGTCCCCCCCCTCCCCATTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_k16.b1 MSMg01no094_k16.b1 CHROMAT_FILE:
MSMg01no094_k16.b1 PHD_FILE: MSMg01no094_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:25 2005
         (287 letters)



>mm_chr3_80886235_80886922
          Length = 688

 Score =  472 bits (244), Expect = e-137
 Identities = 273/284 (96%), Gaps = 5/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gggggaggggaaag-aaagaatgc-acagccttagaattctgaccatgagaacttaaaat 62
           ||||||||   ||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 499 gggggagg---aagcaaagaatgcaacagccttagaattctgaccatgagaacttaaaat 443

                                                                       
Query: 63  cagtaagcatggctccttttgtgtggtgggtacaatagcatgtagctcttgctattaaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cagtaagcatggctccttttgtgtggtgggtacaatagcatgtagctcttgctattaaac 383

                                                                       
Query: 123 attttttccgttccttctcaggccaaatcatggagaatctgaaaagacaatagtgacaat 182
           |||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttttgcctttccttctcaggacaaatcatggagaatctgaaaagacaatagtgacaat 323

                                                                       
Query: 183 ccaaagccagttagatgtctctgactataggaaaaaaagagtgtaaactttgtactgcta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccaaagccagttagatgtctctgactataggaaaaaaagagtgtaaactttgtactgcta 263

                                                       
Query: 243 attattcttgaatgataggcagagatccagggaggctcatgttc 286
           | ||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtaggcttgaatgataggcagagatccagggaggctcatgttc 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)