BAC Information

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BAC

Clone NameMSMg01-094M08
Chromosome3 (Build37)
Map Location 147,644,183 - 147,644,426
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps3_1528.1
Downstream geneLOC100040354, Lphn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094M08.T7 (MSMg01no094_m08.b1)MSMg01-094M08.TJ (MSMg01no094_m08.g1)
ACCAG311849AG311850
length1,093678
length of high quality
(start - end)
---244 (192 - 435)
definitionCHROMAT_FILE: MSMg01no094_m08.b1 PHD_FILE: MSMg01no094_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:34 2005CHROMAT_FILE: MSMg01no094_m08.g1 PHD_FILE: MSMg01no094_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCNNNNNNNNTTTTNNTTTTCNCCCCTCTTTTTTTNNCCCCCNTNNNN
NCCCNTTTTTCTTTNTTCNTTTTATACTTTTTTTATCTTNNTCTCCCGCC
GCTTTTCTTTTANTTCGTTTTCCTTCCTTCTTCCATATTCACCGTATCTT
CGTCCGTTATGTTCCCCTTTTTGTGCTGTATGTATGCTTCACCTCCACGC
GCTTCATGCGTTAGATATTGAGATTTGCGCGCATCCCTCCAGTCTACATT
ACTATCTAAATTCCGATACAATCTTAAACGAATTAAGAGTGCATGCATTA
CTTCTCGCCGTTCACTATAGTGATCAGCGGGGTGCATTTTGTTATTCGGT
GCCTGTGAGCGGCGGGGGGCGCGGGGGGACGGAAGCGCGGGGTGCGGTGC
GGGTAGTCTGGGAACAGGATCGGTAATGATAGCGAAAGCGGCATCACTGA
AGGAATGAACGGGGCGAGACGAGAGGACAAAAGGGGCAGCGCTACGCGTG
CGCGAACAATGCCGCCTGTTGGGCGACTGTGTGGAAGAAAGAGGACGAGT
AGGAGAGGAAGGGAGAGGAGGCAAGGCTGAACGGGGGCGGAGGGGAGCGG
AGAGCGCGCCCGTGTATCCATCAGTCGACGCGATGTATGTAAACACCGGG
AACGGGATTCGCACGATAATTAGAGCGTAGTGAAGCGGTTGAAAGCGCGC
AGACCAAAAAAAGAATAAATACTGATCGTTGTAGTACGATGGTGAGGGAG
TAGGCGCGTAAGATGCATAGCGCAAGCGCGCCGGCAGTAGTATTTATAAG
ATGGGGGCCGGCGTATATTAAGACGTACGAGACGTGGGCGGTCGCCGTTA
TGGCGCCTTGGTAAGTAATTATCGTTACTACTGAGCGTTACACTAGCTAC
GATTGCCTGACATCGCCATAGTACCATACATATTAACCTCGACGCGGAGC
ACGCGCTCGCCTCTTGTTCTCGAGTTCGTGACGGCTGTGGCGCACATAGT
CGATACCATAGGGCATGACGTGAGCTTCCATCTCGGCGGTGTATCACATG
TCTATATAGACGAATCAGGCCGAACGCAACGCGCACACAATAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAAGCCCTTATAAGACGAAGGCTTTTCTCCCTCATTGTGCTGAGAC
TGAAATGCAGAAAGGTTAAGTGATTTGCTTATTTATTTATTTGTGATGCA
TTTATTCTGCCCTCGAAAGTCAGTAATGGAACTGGTAATAGGGGACAACA
TTTCTGATTCCTTATTCTCCCTCCAGCCACTCACCTTGCTTAAAAGCTCC
TGGTAGAAGTTAGTGACATTTACTGTTGTGAGCCAGACGTCATCTTGGTT
GCGATGACATGCCTCTATTACACTTAGAAATAGTGTGAATGGTGCAGGGT
CTGTCACTTCAGAGCTTCTGGTCCATAGCTTAGATGGCTCCACACGTATT
CCGTGAGTCCCCCTGGGTTTTATCACTGTGCAACAAGCACTGGGCTGACT
GCGCAACAAGCACTGAGCTAAGGCCATTGAGTTCTCTAAGTCAATTAAGA
CATCTAACAGCTTTCCAATCTGCTACAGTGACGGGAGTCTCCAGAAAACC
CTAGGAAACTGAAAAGCGATTTGTCCCAAGCATCCTTCAAGTAAGGTCTG
GTTCAAAGGCCCTTATTTAGAATACACCCATCTTACTTTCTGTGTTTCGC
ATCTGTCCATCTGTGATTGATGCTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_m08.g1 MSMg01no094_m08.g1 CHROMAT_FILE:
MSMg01no094_m08.g1 PHD_FILE: MSMg01no094_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:34 2005
         (244 letters)



>mm_chr3_147643983_147644626
          Length = 644

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggacaacatttctgattccttattctccctccagccactcaccttgcttaaaagctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggacaacatttctgattccttattctccctccagccactcaccttgcttaaaagctcct 385

                                                                       
Query: 61  ggtagaagttagtgacatttactgttgtgagccagacgtcatcttggttgcgatgacatg 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 ggtagaagttagtgacatttactgttgtgagcccgacgtcatcttggttgcgatgacatg 325

                                                                       
Query: 121 cctctattacacttagaaatagtgtgaatggtgcagggtctgtcacttcagagcttctgg 180
           |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 324 cctctattacacttagaaatagtgtgaaaggtgcagggactgtcacttcagagcttctgg 265

                                                                       
Query: 181 tccatagcttagatggctccacacgtattccgtgagtccccctgggttttatcactgtgc 240
           ||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccatagcaaagatggctccacgcgtattccgtgagtccccctgggttttatcactgtgc 205

               
Query: 241 aaca 244
           ||||
Sbjct: 204 aaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)