BAC Information

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BAC

Clone NameMSMg01-094M11
Chromosome3 (Build37)
Map Location 43,550,835 - 43,551,145
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094M11.T7 (MSMg01no094_m11.b1)MSMg01-094M11.TJ (MSMg01no094_m11.g1)
ACCAG311855AG311856
length681699
length of high quality
(start - end)
314 (44 - 357)240 (55 - 294)
definitionCHROMAT_FILE: MSMg01no094_m11.b1 PHD_FILE: MSMg01no094_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:34 2005CHROMAT_FILE: MSMg01no094_m11.g1 PHD_FILE: MSMg01no094_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTCAAACCACTTTCTCTAAATAGAGTGATAGCAGTCCTTGAAAGTT
CTCTTTCACTCATTCCTCACACTCCAATTTGAATATCCATGCTCTTGAGA
ACTAACAAAGCATCCTCACACAGGACTGCTGGGATGAGAAGGTCATGCAG
GCCAATAGTCAGCATATTGTGAGGCATATCCTACAACATACTTTCTAGGG
TCGTTCATATTCTCATATGGGCTGAACTGCTAAGATTTGTTTGACAGGAT
ATTATTTCCAGATACTTTAAATCATAGTTTCATTTATTTGTCTAGTCATA
CTGGTAAGCTAGGATATCCAATAACACAGGTGAAAAACACTAAACAAACA
AATAAACATTGACCTGTTAGTACTTTATATTTTCAGGGAATTTGAGACTA
GAAAAAAATCATAGTATCAATCATTTTTTAGTTATTTGCGTTGTCTTCAT
CATTACCAAACTTCAGCCCCAGGCACCTAGATGTTTTAGAAGAGCAAGTA
TGCAGCTGGTTCATTTCAACTGTGAAATAGCAGTGTGCTTTGCAGCCTGT
TGAGCATAGCATCTAGGCTGTCTATTACTAAAGCATACCCTTATATGCCC
TGCTGATACCCTAGTATAAAATGAATAAATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGATATTAGGAAATATTAGGGAAAAATAATTGTCGCTTCCTATTA
TTTTTGTTGTTAGAGTTGGCATTCTGTTCCTGTGGATGTCTTTTTTTAGG
TTTGTGGAAGGATTACTTTCTTGCTTCTTCTAGGATGTGGTTTCTGTCCT
TGTACTGGTTTTTTTTTTCTGTTATTATCCTTTGTAGGGCTGGATCCTTG
GAAAGATAATGAGTGAATTTGTTTTTGTCGTGGAATACTTTTGTGCCTCC
ACCTATGGTAATTGAAAGTTTGTCTGGGTATAGTAGCCTGGGCTGGCATT
TGTGTTCTCTTAGTGCCTGTATAAAATCTGTCAAGGATCTTTTGGCTTTC
ATAGTTTCTGGCGAATAATCTGGTTTAATTTTGATAGGCCTGCCTTTATA
TCTTACTTGACCCTTTTCCCTTACTGCTTTTAATTTTCAGTATTTATTTC
GTGTTTTTGCCGCCCTGATTATTATGTGTTGTGACCAATTTTCTCTCCTT
TTCCCCCCTCCCCACTTTTCCCTTTTTTTTCATTTCTCTCTTCTTCCCTT
TTTTTCCCCTTTTTCCCATTTTTTTTCCCCCCTTTTTCTTTTCCCTCCCT
ATTCTCCATTCCCTTTTTCCCCATTCCCCTTTCTCTTTTTTCACCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_m11.b1 MSMg01no094_m11.b1 CHROMAT_FILE:
MSMg01no094_m11.b1 PHD_FILE: MSMg01no094_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:34 2005
         (314 letters)



>mm_chr3_43550632_43551345
          Length = 714

 Score =  563 bits (291), Expect = e-165
 Identities = 306/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattcaaaccactttctctaaatagagtgatagcagtccttgaaagttctcttt 63
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 514 ggaattcattcaaaccactttctctaaatagagtgctagcagtccttgaaagttctcttt 455

                                                                       
Query: 64  cactcattcctcacactccaatttgaatatccatgctcttgagaactaacaaagcatcct 123
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cactcattcctcaaattccaatttgaatatccatgctcttgagaactaacaaagcatcct 395

                                                                       
Query: 124 cacacaggactgctgggatgagaaggtcatgcaggccaatagtcagcatattgtgaggca 183
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 394 cacacaggactgctgggatgagaaggtcatgcaggtcaatagtcagcatattgtgaggca 335

                                                                       
Query: 184 tatcctacaacatactttctagggtcgttcatattctcatatgggctgaactgctaagat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tatcctacaacatactttctagggtcgttcatattctcatatgggctgaactgctaagat 275

                                                                       
Query: 244 ttgtttgacaggatattatttccagatactttaaatcatagtttcatttatttgtctagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttgtttgacaggatattatttccagatactttaaatcatagtttcatttatttgtctagt 215

                      
Query: 304 catactggtaa 314
            ||||||||||
Sbjct: 214 tatactggtaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)