BAC Information

Click to search

BAC

Clone NameMSMg01-094M12
Chromosome3 (Build37)
Map Location 43,550,822 - 43,551,132
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039219, LOC677788
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094M12.T7 (MSMg01no094_m12.b1)MSMg01-094M12.TJ (MSMg01no094_m12.g1)
ACCAG311857AG311858
length688713
length of high quality
(start - end)
311 (48 - 358)248 (70 - 317)
definitionCHROMAT_FILE: MSMg01no094_m12.b1 PHD_FILE: MSMg01no094_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:34 2005CHROMAT_FILE: MSMg01no094_m12.g1 PHD_FILE: MSMg01no094_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATAGGCAGAGATCCGCGGAATTCTTCAAACC
ACTTTCTCTAAATAGAGTGATAGCAGTCCTTGAAAGTTCTCTTTCACTCA
TTCCTCAAATTCCAATTTGAATATCCATGCTCTTGAGAACTAACAAAGCA
TCCTCACACAGGACTGCTGGGATGAGAAGGTCATGCAGGCCAATAGTCAG
CATATTGTGAGGCATATCCTACAACATACTTTCTAGGGTCGTTCATATTC
TCATATGGGCTGAACTGCTAAGATTTGTTTGACAGGATATTATTTCCAGA
TACTTTAAATCATAGTTTCATTTATTTGTCTAGTCATACTGGTAAGCTAG
GATATCTAATACCACAGGTGAAAAACACTAAACAAACAAATAAACATTGA
CCTGTTAGTACTTTATATTTTCAGGGAATTTGAGACTAGAAAAAAATCAT
AGTATCAATCATTTTTTAGTTATTTGCGTTGTCTTCATCATTACCAAACT
TCAGCCCCAGGCACCTAGATGTTTTAGAAGAGCAAGTATGCAGCTGGTTC
ATTTCAACTGCGAAATAGCAGTGTGCTTTGCAGCCCGTTGAGCATAGCAT
CTAGGCTGTCTATTAGTAAAGCATGACCTTATATGCCCTGCTGATACCCT
AGTATAAAAATGAATAAATTTGAGGCGAAGCCAGCTTA
CATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTGATATTAGGAAATATTAGGGAAAAATAA
TTGTCGCTTCCTATTATTTTTGTTGTTAGAGTTGGCATTCTGTTCCTGTG
GATGTCTTTTTTTAGGTTTGTGGAAGGATTACTTTCTTGCTTCTTCTAGG
ATGTGGTTTCTGTCCTTGTACTGGTTTTTTTTTTCTGTTATTATCCTTTG
TAGGGCTGGATCCTTGGAAAGATAATGAGTGAATTTGTTTTTGTCGAGGA
ATACTTTTGTGTCTCCACCTATGGTAATTGAAAGTTTGTCTGGTTATAGT
AGCCTGGGCTGTCATTTGTGTTCTCTTAGTGCCTGTATAAAATCTGTCAA
GGATCTTTTGGCTTTCATAGTTTCTGGCGTATAATTCGGCTTAATTGTGA
TACGCCTGCCTTTATATCTTACTTGACCCTTTTCCCTTACTGCTTTTAGT
ATTTATTATTCATTTATCGCCCCTCCTGATCTGACTATTTTGTGTTGACA
TTTATTGCATTTCCTCACCTGACCGTTTTACCATATTCTTATTCTTTTGC
TTTCTTCCCTTTTTATCCCCCCATGAAGTATTCGTTATCGCCCCCTATAT
TCTTTTCTCCTCCCTTTTCCTGTTCCTTTTATCCCCTTCTTCCTTTTGCT
TTTTTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_m12.b1 MSMg01no094_m12.b1 CHROMAT_FILE:
MSMg01no094_m12.b1 PHD_FILE: MSMg01no094_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:34 2005
         (311 letters)



>mm_chr3_43550622_43551332
          Length = 711

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accactttctctaaatagagtgatagcagtccttgaaagttctctttcactcattcctca 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 511 accactttctctaaatagagtgctagcagtccttgaaagttctctttcactcattcctca 452

                                                                       
Query: 61  aattccaatttgaatatccatgctcttgagaactaacaaagcatcctcacacaggactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aattccaatttgaatatccatgctcttgagaactaacaaagcatcctcacacaggactgc 392

                                                                       
Query: 121 tgggatgagaaggtcatgcaggccaatagtcagcatattgtgaggcatatcctacaacat 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgggatgagaaggtcatgcaggtcaatagtcagcatattgtgaggcatatcctacaacat 332

                                                                       
Query: 181 actttctagggtcgttcatattctcatatgggctgaactgctaagatttgtttgacagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 actttctagggtcgttcatattctcatatgggctgaactgctaagatttgtttgacagga 272

                                                                       
Query: 241 tattatttccagatactttaaatcatagtttcatttatttgtctagtcatactggtaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 271 tattatttccagatactttaaatcatagtttcatttatttgtctagttatactggtaagc 212

                      
Query: 301 taggatatcta 311
           |||||||||||
Sbjct: 211 taggatatcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)