BAC Information

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BAC

Clone NameMSMg01-094P13
Chromosome3 (Build37)
Map Location 17,136,668 - 17,136,988
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936
Downstream geneLOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094P13.T7 (MSMg01no094_p13.b1)MSMg01-094P13.TJ (MSMg01no094_p13.g1)
ACCAG311999AG312000
length654666
length of high quality
(start - end)
319 (15 - 333)496 (55 - 550)
definitionCHROMAT_FILE: MSMg01no094_p13.b1 PHD_FILE: MSMg01no094_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:50 2005CHROMAT_FILE: MSMg01no094_p13.g1 PHD_FILE: MSMg01no094_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGATCCGCGGATTCTATCTAGCTTAAAAAAAAAAACAAGAAAATAAAAA
TCATAAACCTTGCAGGTTAATCAGTAAAACATTTTCTTTCTTGTTTTGTT
CTGATAGCCTTCTTGTCTTACAGAAGACAGCCTTTCAGTGCAGCTTCTCA
GGCATGATTCCATACAACCTTTGAATTCACTGTCTTTATACTGTATATGT
TTCAAACCATGACACAATCAGAAGGGATCTTCGAAGGCCTACAGCTTTAT
GCATCCACACAGTTTCAATCATTGCAAACATTCCTTTTTCCTTGGGCAAA
CCCTTCCTGCCAATCTGAATACAACCTTTTCTGCAGGAGAAGAGAGCTTG
CTTCCATTTCTGACTCACTCAAGGTGAAACAGAAATGTTTCTCTTTTATC
TTCTATTTCTATATTTCATTTTTATTTTTCTTTATGTATCACAACAAAAC
CACAGCACACTAAATATTATTCTTAAACCCACAGAAAACTAAAGATCCTT
ATCACATAATAAGGAAACTTCTCTTTCCAACAGGCAGAGGTCATTACAAA
AGTCATAACTGATGAAACTGGAGATAACAAGCGTTATGCAGTTCCCAGCT
TTAAGTGATACATGTATAACACACCTCCTGCATCTTAGGCTTAAGGAACA
TCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTTAGTTCTCTACCCCATTTTTAATGGGGTTATTTGATTTTCTGG
AGACCTGCTTCTTGAGTTCTTGGTATTATTGGATATTAGTCCCATATCAA
ATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGTTGGCCTTTTTGTC
TTATTGACAGTATCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTC
CCATTTGTTGGTTCTTGATCTTACAACACAAGGCATTGGTGTTCTGTTCA
GGCATTTTCCCCCTGTACCTATATATTCTAGGCTTTTCCCCACTTTCTCC
TCTATAAGCTTTAGTGTCTCTGATTTTATGTGGAGTTCCTTGATCTACTT
CAAATTGAGCTTTATACAAGGAGATGAGAATGGATCAATTTGCATTCTTC
TACATAATAATCGCCAAATGAGCTACCACCATTTGTTGAAAATGCTGACT
TTTTCCCACTTGATGGCTTTAGCTTCCTTGTCAAAGATCACGTGACCATA
GATATGTGGGTTCATTTCTGGACCTTCAATTATAACACATTGATCTATCT
GTCTGTCATTGCTCCAGCACCATGCAGCTTTTTATCAAAATTGCTCTGCA
CTACAGCTTTATGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_p13.b1 MSMg01no094_p13.b1 CHROMAT_FILE:
MSMg01no094_p13.b1 PHD_FILE: MSMg01no094_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:50 2005
         (319 letters)



>mm_chr3_17136468_17137188
          Length = 721

 Score =  555 bits (287), Expect = e-162
 Identities = 312/321 (97%), Gaps = 2/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatctagcttaaaaaaaaaaac--aagaaaataaaaatcataaaccttgcaggttaatc 58
           ||||||||||| |||||||||||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 201 ctatctagctttaaaaaaaaaaccaaagaaaacaaaaatcataaaccttgcatgttaatc 260

                                                                       
Query: 59  agtaaaacattttctttcttgttttgttctgatagccttcttgtcttacagaagacagcc 118
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaaaacatttcctttcttgttttgttctgatagccttcttgtcttacagaagacagcc 320

                                                                       
Query: 119 tttcagtgcagcttctcaggcatgattccatacaacctttgaattcactgtctttatact 178
           | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tctcagtgcagcttctcaggcatgattccatgcaacctttgaattcactgtctttatact 380

                                                                       
Query: 179 gtatatgtttcaaaccatgacacaatcagaagggatcttcgaaggcctacagctttatgc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatatgtttcaaaccatgacacaatcagaagggatcttcgaaggcctacagctttatgc 440

                                                                       
Query: 239 atccacacagtttcaatcattgcaaacattcctttttccttgggcaaacccttcctgcca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccacacagtttcaatcattgcaaacattcctttttccttgggcaaacccttcctgcca 500

                                
Query: 299 atctgaatacaaccttttctg 319
           ||||||| |||||||||||||
Sbjct: 501 atctgaagacaaccttttctg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 721
Length adjustment: 9
Effective length of query: 310
Effective length of database: 712
Effective search space:   220720
Effective search space used:   220720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)