BAC Information

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BAC

Clone NameMSMg01-095E18
Chromosome3 (Build37)
Map Location 47,798,735 - 47,799,029
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095E18.T7 (MSMg01no095_e18.b1)MSMg01-095E18.TJ (MSMg01no095_e18.g1)
ACCAG312244AG312245
length717714
length of high quality
(start - end)
663 (43 - 705)296 (73 - 368)
definitionCHROMAT_FILE: MSMg01no095_e18.b1 PHD_FILE: MSMg01no095_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:16 2005CHROMAT_FILE: MSMg01no095_e18.g1 PHD_FILE: MSMg01no095_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG
CCAGCATCCAAGTAAATGGTGAGAAGCTTGAAGCAATCCCACTAAAAACA
GGGACTAGACAAGGCTGTCCACTCTCTCCCTACCTATTCAACATTGTACT
TGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAGGAAGAATTCAAACTATCATTTTTGCAGATGATGTGATAG
TATACATACGTGACCCTAAAAATTCCACCAGAGAACTCCTAAGCCTGATA
AACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAAT
GGCCTTTCTCTACACAAAGGACAAACAGGCTGAGAAAGAAATTAGGGAAA
CAACACCCTTCTCAATAGCCACAAATGATATAAAATACCTAGGTGTGACT
CTAACTAAGGAAGTCAAAGATCTGTATGACAAGAACTTCAAGTCTCTGAA
GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCCCAAAGCAATC
TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGA
ATTAGAAAGGGCAATCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGTCAAAACCTTAGGTATAGTGTCCC
ATACCTGTGTCCCCAGCACTTAGGAGACAGTAAAAGCTGGTCTGGGAGCT
CTAGGTAACCTTGGTTCTCTATGAAAAGCAAGCTGAGACAGGGCAGCGTG
GAAGATACTCTGCAAAAATAAACAAATAGCAAGCAAGCAAACAAAAATCT
CAGAGAAATGTCTATCATTTGGGAAGAATGCTACTTAATTAAAGTAAGCT
GTTACAAGGTGTTATTTTTACCTTAAGAAACTACTTTACTGAGATGAATT
ATTCAACTCACCACTGCTAATCATAACAGGATTTTGTTACTGAACAAAGA
AAAATGGTTCACAAATCAACTCAATGAACTTTAGCAATGAGATTATTTAT
TTTTCCAAAATTCTTTGCTGTCATAAAGTATTTTACAGTTTACATTATGT
TAAGTAGAAATGAGCAAGATTGATTGACTTATCAAAACTGCAAAAATATA
CATATACAAATGTAAAAACTGGTAAATATCATTTACTAATTGTGGAGTAT
CATAGATATATACTAGTGACTCTTTACATGTATAAACATTATTGATTCAA
ATACATGTAAAATTGAAGTGATTTCCTTTCATATGTTAGAATATAGAAAT
GAAATGCTTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_e18.g1 MSMg01no095_e18.g1 CHROMAT_FILE:
MSMg01no095_e18.g1 PHD_FILE: MSMg01no095_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:16 2005
         (296 letters)



>mm_chr3_47798535_47799230
          Length = 696

 Score =  571 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtcaaaaccttaggtatagtgtcccatacctgtgtccccagcacttaggagacagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgtgtcaaaaccttaggtatagtgtcccatacctgtgtccccagcacttaggagacagta 436

                                                                       
Query: 61  aaagctggtctgggagctctaggtaaccttggttctctatgaaaagcaagctgagacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaagctggtctgggagctctaggtaaccttggttctctatgaaaagcaagctgagacagg 376

                                                                       
Query: 121 gcagcgtggaagatactctgcaaaaataaacaaatagcaagcaagcaaacaaaaatctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gcagcgtggaagatactctgcaaaaataaacaaatagcaagcaagcaaacaaaaatctca 316

                                                                       
Query: 181 gagaaatgtctatcatttgggaagaatgctacttaattaaagtaagctgttacaaggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gagaaatgtctatcatttgggaagaatgctacttaattaaagtaagctgttacaaggtgt 256

                                                                  
Query: 241 tatttttaccttaagaaactactttactgagatgaattattcaactcaccactgc 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tatttttaccttaagaaactactttactgagatgaattattcaactcaccactgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)