BAC Information

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BAC

Clone NameMSMg01-095I09
Chromosome3 (Build37)
Map Location 22,343,177 - 22,343,584
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
Downstream geneLOC675593, LOC100040378, LOC623751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095I09.T7 (MSMg01no095_i09.b1)MSMg01-095I09.TJ (MSMg01no095_i09.g1)
ACCAG312416AG312417
length778794
length of high quality
(start - end)
451 (118 - 568)285 (166 - 450)
definitionCHROMAT_FILE: MSMg01no095_i09.b1 PHD_FILE: MSMg01no095_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:34 2005CHROMAT_FILE: MSMg01no095_i09.g1 PHD_FILE: MSMg01no095_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTTTTTTNNTTTTTNTNNNNNTTTTTTTTNTNTTNTTTTNCNNTC
TTTCCCCCCNNGNNTTTTATAATCTATXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCGCGGAATTCACTTCTGCCTCAAGAAGAAAATG
AGTTCAGTGAGACCAGAAGATGCCACGTGCCTCTGCTGGCCCCTTCTCCT
AGCCCAGCTTTGGAGACAGTTGCTGCTATCACCAAGTCCAAGATCAGGTA
TTTCATTTGTTTCTTGTCACCCTCAGAGTAGCACTCCTCTACTGATATGG
ACCATATTTTACTGATATTGATGTTGTTTTATTTCTCTTTTGTTTCCTCT
TCTCTTTGGAAGCAGAAAGTATAAAAGCAAAATAAGCTCATTTAAGTGAT
TTACTCTATGAGTTTTATATATCTAGTCTTTAATTTACAGCACCCAACAA
TCTACCAGTGGATCCTTACATATACTCAAGATTCAGCCATGATGACATAC
ATCTATAATCCCAGAACTCAGACAGGAAGATGTTCATGAGTTTGAAACAA
GCCTGAACTGAATAATGCAGGTTGGATTCCAGGAAAACCTAGAGTGGACT
TTCTCCCAAAAATGGTAGAGGAGCAATACAACAGAAGGGGAGCAATATCC
AATAAACAAAACCCAGTGAAAGGAGCTGCTTTGAGGAAAACTAGAGATAC
GTAGACCCCGTAATTGTCCTGTGTCCAAAAGAATTACCTATGGATGACCC
TGTCCTTCATCTTATCACTTAATTGATC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCCCNNNNNNNNNNCCCCCCCCCCCCCCCCCNCNNNNTCTCGATGAXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTCAGACAACCGGATCCTTCTACGGCAAAGCTTT
TATTGCTTACCCCTCAGGAAAACCCCGAACCCAGAAAATGGTGCTGCTTA
TATAGCCCACAGCATGATGTTTCAGCACCTGATGTGGCGTGACAGCACCT
GATTAGTTGCTTGCCCATCACCCCATTATTACGCCCCGAGATGGGCAGTG
ACTGGACGTGAATTCACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGT
TAGGCACAGTGGAAGCCAGCACCATCTTATAATGGTGATTGCTCATGGTA
CGGCTCTCCACCCCTAGTGTCAGAGACTTGTGCTTGCCCATGGAATGGGT
CTCAAGTTGGAACAGTTATTGGTTGGCTATTCCTTCAGTCTGTGCTCTGT
CTTCCATTCCTGCATTTCTTGTTGACAAGATAAATTATGGGTCAAAAGTG
TTGTGGGTGGTCTGGAGTTCTTATCTCTCCACTTGAGTTCCTGCCTGATT
ACTGATCTGCCATGCTGTGAATCCCAGTCAAGGTCACCCTCTCTGATTCT
TGTGTGCCTCCCTTATCCCAGGTTTCTTTCACCATCCTAGAAATGCCCCC
TCATCTCTGCCCCCCCCGTCAAGTTGCATATCTCCTTTTACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_i09.b1 MSMg01no095_i09.b1 CHROMAT_FILE:
MSMg01no095_i09.b1 PHD_FILE: MSMg01no095_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:34 2005
         (451 letters)



>mm_chr3_22342905_22343755
          Length = 851

 Score =  592 bits (306), Expect = e-173
 Identities = 393/448 (87%), Gaps = 41/448 (9%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttctgcctcaagaag-aaaatgagttcagtgagaccagaagatgccacgtgc 63
           |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaattcacttctggatcaagaagaaaaatgagttcagtgagaccagaagatgccacgtgc 621

                                                                       
Query: 64  ctctgctggccccttctcctagcccagctttggagacagttgctgctatcaccaagtcca 123
           |||||||||||  ||||||||||||||||||| |||||||||||||||||||||      
Sbjct: 620 ctctgctggccaattctcctagcccagctttgaagacagttgctgctatcacca------ 567

                                                                       
Query: 124 agatcaggtatttcatttgtttcttgtcaccctcagagtagcactcctctactgatatgg 183
                                             ||||||||||||||||||||||||||
Sbjct: 566 ----------------------------------agagtagcactcctctactgatatgg 541

                                                                       
Query: 184 accatattttactgatattgatgttgttttatttctcttttgtttcctcttctctttgga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 accatattttactgatattgatgttgttttatttctcttttgtttcctcttctctttgga 481

                                                                       
Query: 244 agcagaaagtataaaagcaaaataagctcatttaagtgatttactctatgagttttatat 303
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 480 agcagaaagtataaaagcaaaataaactcatttaagtgatttactctatgagttttatat 421

                                                                       
Query: 304 atctagtctttaatttacagcacccaacaatctaccagtggatccttacatatactcaag 363
           |||||||||||||||||||| ||  || ||||||||| ||||||||||||||||||||||
Sbjct: 420 atctagtctttaatttacagtacaaaaaaatctaccaatggatccttacatatactcaag 361

                                                                       
Query: 364 attcagccatgatgacatacatctataatcccagaactcagacaggaagatgttcatgag 423
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 attcaatcatgatgacatacatctataatcccagaactcagacaggaagatgttcatgag 301

                                       
Query: 424 tttgaaacaagcctgaactgaataatgc 451
           |||||||| |||||||||||||||||||
Sbjct: 300 tttgaaaccagcctgaactgaataatgc 273


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)