Query= MSMg01no095_j02.b1 MSMg01no095_j02.b1 CHROMAT_FILE:
MSMg01no095_j02.b1 PHD_FILE: MSMg01no095_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:38 2005
(194 letters)
>mm_chr3_80347638_80348232
Length = 595
Score = 364 bits (188), Expect = e-105
Identities = 191/192 (99%), Gaps = 1/192 (0%)
Strand = Plus / Minus
Query: 1 atagacaatttggaggagagtattaacagaatagacaaatatgctcaaatggagtgaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atagacaatttggaggagagtattaacagaatagacaaatatgctcaaatggagtgaagc 333
Query: 61 tgcctaggaccctttggaataagaattcctgtatttaaattcgggctaatcagcagggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgcctaggaccctttggaataagaattcctgtatttaaattcgggctaatcagcagggtg 273
Query: 121 tggggatttttttttt-cctttttagtctgcagccaaggcagatggatggttgtatggag 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tggggatttttttttttcctttttagtctgcagccaaggcagatggatggttgtatggag 213
Query: 180 acactgcagcta 191
||||||||||||
Sbjct: 212 acactgcagcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 595
Length adjustment: 8
Effective length of query: 186
Effective length of database: 587
Effective search space: 109182
Effective search space used: 109182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no095_j02.g1 MSMg01no095_j02.g1 CHROMAT_FILE:
MSMg01no095_j02.g1 PHD_FILE: MSMg01no095_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:38 2005
(610 letters)
>mm_chr3_80170213_80171222
Length = 1010
Score = 1125 bits (582), Expect = 0.0
Identities = 603/610 (98%)
Strand = Plus / Plus
Query: 1 ttccgtgcagcctacacacaacactaaaaccatactgatataagatacaccaatgagatc 60
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 ttccgtgcagcctacacacaacactaaaaccatactgatataagatagaagaatgagatc 260
Query: 61 tactctttactgtgaaagtggaatttttgtcagactcttgtagagagacttagttatcag 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactctttactgtgaaagtgggatttttgtcagactcttgtagagagacttagttatcag 320
Query: 121 aaaaaggccaacagcacataacaacacacaaaaaatctaataagaaaatcctcatcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaggccaacagcacataacaacacacaaaaaatctaataagaaaatcctcatcagtt 380
Query: 181 tgaccttctgtcctaactggtctgaagtgtcagggctatgtacaaaagcactctcattac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaccttctgtcctaactggtctgaagtgtcagggctatgtacaaaagcactctcattac 440
Query: 241 tccagtaccactagctgagttagatagccttcttggcaaggtgagtgaaataaaagttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagtaccactagctgagttagatagccttcttggcaaggtgagtgaaataaaagttaa 500
Query: 301 tagcaacgataaaacttcacaatgaagtcacaattgtttgtgtcctacaggtatctactg 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtaacgataaaacttcacaatgaagtcacaattgtttgtgtcctacaggtatctactg 560
Query: 361 taagtctgaattaaatatttctttttgttgggctagttaaatcaaagccctaccttttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagtctgaattaaatatttctttttgttgggctagttaaatcaaagccctaccttttac 620
Query: 421 tttctgattattcaagctgtacacagacattagaatataaaattgctgagtggagattac 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttctgattattcaagctgtacacagacattagaatataaaattgctgagtggagattac 680
Query: 481 cctagcaagcctcaaatggaatagtctaagagactgagatattctagaaaaattgctcaa 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 cctagcaagcctcaaatggaatagtcaaagagactgagatattctagaaaaattgctcaa 740
Query: 541 gttaggagtccagctttctaacttactgagagcccactttccttgcttccatagcacatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttaggagtccagctttctaacttactgagagcccactttccttgcttccatagcacatc 800
Query: 601 tctaagcaag 610
||||||||||
Sbjct: 801 tctaagcaag 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
