CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
CTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAAC
TCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGA
TACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGGAGAA
TGAC

GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATTAATGAGTTCATAACACACTGCC
TAGTGCAGTAACAAATGATCCAAATCTCCTTCACTGTTCAGTAGTACATT
GTCTTAGTTGTAGTCACTGTACACTTGTCTTAATAGAAATAAACCAGATG
AACTTGTATAATCATGTAGATATTTCCTCATATCAAATACCACTTTTTAA
ACATCTAATGTCATCAAATCTAAACACTGGCTGTTAAAAACTTTTCTGGG
AAATAAGACACAATAGTCTCCATTTGTGAAGACCTACAAAAAGGGTTCTC
GAGGGCTATCCCTAGAAGAGAGAAGAACGTGGAACAACACTGGAAAGAGT
TCTAACACATCCATCTACATCAGGAGAAAACACACACGTTTATTTTTTTA
CTCTTTGATCACATACCACATTTAATACACCTTTAAAAAGGAAAAGAAGA
AAATCTCATCTCATAATTTATAAACAGAAAAATAAAAACAAAAATACAGA
AGATAGAAAAACTGAGCCATAGCAAGGTTTACAGATTAAAGGCCCATACC
TTTAATCATAGCACTCGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCC
GAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGA
GGCAGAGGCAC

Query= MSMg01no095_k13.g1 MSMg01no095_k13.g1 CHROMAT_FILE:
MSMg01no095_k13.g1 PHD_FILE: MSMg01no095_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:45 2005
         (546 letters)



>mm_chr3_132715985_132716930
          Length = 946

 Score = 1056 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttattaatgagttcataacacactgcctagtgcagtaacaaatgatccaaatctccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttattaatgagttcataacacactgcctagtgcagtaacaaatgatccaaatctccttc 260

                                                                       
Query: 61  actgttcagtagtacattgtcttagttgtagtcactgtacacttgtcttaatagaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgttcagtagtacattgtcttagttgtagtcactgtacacttgtcttaatagaaataa 320

                                                                       
Query: 121 accagatgaacttgtataatcatgtagatatttcctcatatcaaataccactttttaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accagatgaacttgtataatcatgtagatatttcctcatatcaaataccactttttaaac 380

                                                                       
Query: 181 atctaatgtcatcaaatctaaacactggctgttaaaaacttttctgggaaataagacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctaatgtcatcaaatctaaacactggctgttaaaaacttttctgggaaataagacaca 440

                                                                       
Query: 241 atagtctccatttgtgaagacctacaaaaagggttctcgagggctatccctagaagagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagtctccatttgtgaagacctacaaaaagggttctcgagggctatccctagaagagag 500

                                                                       
Query: 301 aagaacgtggaacaacactggaaagagttctaacacatccatctacatcaggagaaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaacgtggaacaacactggaaagagttctaacacatccatctacatcaggagaaaaca 560

                                                                       
Query: 361 cacacgtttatttttttactctttgatcacataccacatttaatacacctttaaaaagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacgtttatttttttactctttgatcacataccacatttaatacacctttaaaaagga 620

                                                                       
Query: 421 aaagaagaaaatctcatctcataatttataaacagaaaaataaaaacaaaaatacagaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagaagaaaatctcatctcataatttataaacagaaaaataaaaacaaaaatacagaag 680

                                                                       
Query: 481 atagaaaaactgagccatagcaaggtttacagattaaaggcccatacctttaatcatagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atagaaaaactgagccatagcaaggtttacagattaaaggcccatacctttaatcatagc 740

                 
Query: 541 actcgg 546
           ||||||
Sbjct: 741 actcgg 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)