BAC Information

Click to search

BAC

Clone NameMSMg01-096A01
Chromosome3 (Build37)
Map Location 144,985,282 - 144,985,714
singlet/doubletsinglet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096A01.T7 (MSMg01no096_a01.b1)MSMg01-096A01.TJ (MSMg01no096_a01.g1)
ACCAG312783AG312784
length684706
length of high quality
(start - end)
166 (160 - 325)435 (74 - 508)
definitionCHROMAT_FILE: MSMg01no096_a01.b1 PHD_FILE: MSMg01no096_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:12 2005CHROMAT_FILE: MSMg01no096_a01.g1 PHD_FILE: MSMg01no096_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCCTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCTCTGGCTTTCCTTATAGCTACAGCCCATCTTGTTTTGCGA
GGCGGGGCCTCACTGGGTATCTCTGACTGGTCTAGAGCTTATTATGTATA
CCAGGTTGGTCTTGGCTTGTGCTTGAGCCTCTTGTTTCTGCTGCCTGACT
GCTGGTATTACAGGTGTATGCTATCATACATGGTTTTAAATTGTGTAAAT
TATTAATTTTGCTTCAAGTTACCAATACCACAGATTATCATTAACAACAA
TAAGTTACCATCGCATGTTATTTATTTCTTTTGAGATGAAAAAGGCATTT
AAAAAACAAAAACAAACAATCACTAACTATACCGTGCCCAGGAGGAATCC
TATGTAACCAGCTTTCAAACATACTTTGCTACATACATGTCTCTCTTTTG
ATGTGTGCATTGTAACAGTGAGAAAACAGGCCTCCAGAGGTGCTCGTTTC
TACTTCGGCCTCCCAGAGGTCTGCTGCACGCACGGAAGAAGTGAGCGTGC
AGATCTGGACTTTGCCAACTTTGCTTACCAGTTCAGAGCAAGAACCCCCA
CTATTTCTTGTATGACTTCCCATGTTTTATAAACCTGCTTGTCTTCTCTC
TGGCCCCACAACACACGCGTTCATATTCATCTTC
CCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAGAACAATTTTCTCCTGACAAGAC
AAGCAATGCTTACTCTGTGTTGTATGTTAAGATGTGTGCCTAGAGAGCAC
AGAAGTGAGAGTGTAAAGCCCCCCAGGGACCTGCAGACCTGGAAGCTTTC
CGAAGACCATGTATTCCCTGTTTCTGTGAACTTAATTTTTCCCCTTTGTG
GGTAAGAATAAAGTAGCTGTCTCACGAGGTTGTTGCATGAGTCAGTAATG
AGAAAGATCAAGCATAAGCATAGTTCAAGGGGCAAACAAGCTTCCCAGGG
GATAGAGTCAGATGATGATAATTAGCAGTTCTACAGTACAAACTGACAAA
TGTCCAAGTGGTTGATGGGATACTGTATGGAATACTAGACTAGTAAGATA
AAGAGCATCTTTTCAAAGACATTGCCATTCTGAAACTAAATAGCACATCA
TGAGGCAGGTGAAACAACACTACCATGCTTACACACTGGGTTAGAACAGT
GTGGGGTGCCTGACAGCAGTACGCTATGAATCTCACGTACCATAGTTTCA
ACAGAATTGTCAGGACAGAGATGATTCTTCACGACAATGACTCCAAGGTT
CTAAAAGGAGGTTGGATCAAGCAGGTTTGAGGAATGCCCGGCTAAAATGT
ATTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_a01.g1 MSMg01no096_a01.g1 CHROMAT_FILE:
MSMg01no096_a01.g1 PHD_FILE: MSMg01no096_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:12 2005
         (435 letters)



>mm_chr3_144985080_144985914
          Length = 835

 Score =  752 bits (389), Expect = 0.0
 Identities = 422/433 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   tagaacaattttctcctgacaagacaagcaatgcttactctgtgttgtatgttaagatgt 62
           |||||||||||||||||||  |||||||||||||||||||||||||| |||||||| |||
Sbjct: 203 tagaacaattttctcctgaggagacaagcaatgcttactctgtgttgcatgttaaggtgt 262

                                                                       
Query: 63  gtgcctagagagcacagaagtgagagtgtaaagccccccagggacctgcagacctggaag 122
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 gtgcctagagagcacagaagtgagagtgtaaagacccccagggacctgcagacctggaag 322

                                                                       
Query: 123 ctttccgaagaccatgtattccctgtttctgtgaacttaatttttcccctttgtgggtaa 182
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 ctttccgaagaccatgtattcgctgtttctgtgaacttaatctttcccctttgtgggtaa 382

                                                                       
Query: 183 gaataaagtagctgtctcacgaggttgttgcatgagtcagtaatgagaaagatcaagcat 242
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaataaagtagctgtctcatgaggttgttgcatgagtcagtaatgagaaagatcaagcat 442

                                                                       
Query: 243 aagcatagttcaaggggcaaacaagcttcccaggggatagagtcagatgatgataattag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aagcatagttcaaggggcaaacaagcttcccaggggatagagtcagatgatgataattag 502

                                                                       
Query: 303 cagttctacagtacaaactgacaaatgtccaagtggttgatgggatactgtatggaatac 362
           |||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 503 cagttctacagtacaaactgacaaatgtccaagtggctgatgggataccgtatgaaatac 562

                                                                       
Query: 363 tagactagtaagataaagagcatcttttcaaagacattgccattctgaaactaaatagca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagactagtaagataaagagcatcttttcaaagacattgccattctgaaactaaatagca 622

                        
Query: 423 catcatgaggcag 435
           |||||||||||||
Sbjct: 623 catcatgaggcag 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)