BAC Information

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BAC

Clone NameMSMg01-096B22
Chromosome3 (Build37)
Map Location 154,459,020 - 154,459,374
singlet/doubletsinglet
Overlap geneTnni3k
Upstream geneAsb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180
Downstream geneFpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096B22.T7 (MSMg01no096_b22.b1)MSMg01-096B22.TJ (MSMg01no096_b22.g1)
ACCAG312872AG312873
length814737
length of high quality
(start - end)
68 (180 - 247)355 (79 - 433)
definitionCHROMAT_FILE: MSMg01no096_b22.b1 PHD_FILE: MSMg01no096_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:21 2005CHROMAT_FILE: MSMg01no096_b22.g1 PHD_FILE: MSMg01no096_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTATCTATAATTGCGGCCGCTATACGAATCCTATATCTCAAAATCCGCG
GAATTCCTTTGAATTCCCCAGTGTGTTGAACATTTGATACATTACAAAAC
ACAACCCCCCACCCCACTATGTGTGAGGGTTGCCCATCATCGTCCTTCCC
ATTTTACAAAGTCTGACCCTTGCTCTGTAGGTGTTATTCTATCCTTTTCC
TTCAAATTATAAACCTCTCCTCTCCTTTCCTCTCCTCTCCTCTCCTCCCC
GCCCCTCTCCTCTCTTCTCTCCTCTCCGCCCCCTCTCTCATCCTTCACCT
ACATCCCCGCCCCCCTCCTTCTCTCTCTCCCCCCCCTTTTCCCCTCGTCT
TCCTCCCCACTTTCTTTTTTTCCCTTACCCCCCGCCCCGCTCCTTTTCCC
CTTTCTTTTTACCACCTTCTTACTCCCCCCCCCATCTTTTTTTTCCTACC
TCCGCCCCCCTCCCTCTCCTCCTCTTTCCCCCCCCTCCCCTCCTTCTTTC
TTTCTTTCCTCCATTCTCCCCTTTTTTCTTACCCCCCCCTCCCTTTCCGT
TTTCCTTTCGCTTCCCTTTCCTCTTTTCCTCCCCCCGCTCTTTCCTTTTC
CTTACCCCCCTTCCCTCTTTCACTCTCCCTACTCCTCTTGCCCATTCTTT
TCCTTCTCTCCCCCCTTCTCTATATCCCCCTCCCACCTCGCTTTGTTGCG
TATTATGCCTCCTCCGCCCTCCCCTCTCTCCCGTTCTCCTTCACGCTCTA
CTATCCCCCCCCTTCTTCCCATCCCCTTCCTTCCCCCCTTTTTCCCTCTC
CTCCTTTTCTCCCC
ACTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAGCCAGGGTGTGCCTTAC
CTGCAATGAGCTCACAGACACAGGCATTGGCTTTGTGGTCGCTGCATCGC
TGGACCAGCCATGTTTTTGTAGTCACTACTTCAGCTGAGTCCTGCGTCCT
GATACCCAAATTAAACTGAGCGCCTGTGAAATCTTGCTGAAGGTCGAGGG
TGCATGGGTGTGAAGAGTTAGCTTCGTTGATCAGGGTCTAGTTTCTTCTT
TTGTTTGGCTTGAGTATGATTAGCTTCCATCTGTCTGTCATCTGACAAGA
GTCCAATGCCAGTGGGTGTGACATCTCCTAGAGAAGGTTAAGTTCCCTGG
CATGAACTGTATTCAGACACTGAACACCCAGGGTATCCTAGAGATAGGCT
TTTATTCACAGGAAATCAGATAGCCATTTGGTGATAACGTATTTATTCCC
CATTACTGTCTTGTTGCCAAGACTACTGCACAAAGCCCATTGCTTAAATG
GTGCTACAGTCCCAACAAGACCACATGCACATACTGAAACAACAAATTAT
AATTTAAAAAGTAAATCAACAGTCTGTAGCCAGAATTGCGTGCTGTTTAC
CGTTTACCGTTGACCGAGGTGACTGCCATACTTTGAACCCCTAGAATTCT
CTCTTCCATCATTCCCTTCCCTCCCAAAATCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_b22.g1 MSMg01no096_b22.g1 CHROMAT_FILE:
MSMg01no096_b22.g1 PHD_FILE: MSMg01no096_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:21 2005
         (355 letters)



>mm_chr3_154458820_154459574
          Length = 755

 Score =  617 bits (319), Expect = 0.0
 Identities = 346/355 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagccagggtgtgccttacctgcaatgagctcacagacacaggcattggctttgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cagaagccagggtgtgccttacctgcaatgagctcacagacacaggcattggctttgtgg 496

                                                                       
Query: 61  tcgctgcatcgctggaccagccatgtttttgtagtcactacttcagctgagtcctgcgtc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 495 tcgctgcatcgctggaccagccatgtttttgtagtcactacttcagctgagtcctgagtc 436

                                                                       
Query: 121 ctgatacccaaattaaactgagcgcctgtgaaatcttgctgaaggtcgagggtgcatggg 180
           ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 435 ctgatacccaaattaaactgaacgcctgtgaaaccttgctgaaggtcgagggtgcatggg 376

                                                                       
Query: 181 tgtgaagagttagcttcgttgatcagggtctagtttcttcttttgtttggcttgagtatg 240
           ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgtgaagagctagctttgttgatcagggtctagtttcttcttttgtttggcttgagtatg 316

                                                                       
Query: 241 attagcttccatctgtctgtcatctgacaagagtccaatgccagtgggtgtgacatctcc 300
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 315 attggcttccatctgtctgtcatctgagaagagtccaatgccagtgggtgtgacatctcc 256

                                                                  
Query: 301 tagagaaggttaagttccctggcatgaactgtattcagacactgaacacccaggg 355
           ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 255 tagagaaggttaagttccctggcatgaactgcattaagacactgaacacccaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)