BAC Information

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BAC

Clone NameMSMg01-096I11
Chromosome3 (Build37)
Map Location 145,182,591 - 145,313,026
singlet/doubletdoublet
Overlap geneCol24a1, 2410019A14Rik, Cyr61
Upstream geneHs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream geneDdah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096I11.T7 (MSMg01no096_i11.b1)MSMg01-096I11.TJ (MSMg01no096_i11.g1)
ACCAG313184AG313185
length735736
length of high quality
(start - end)
170 (71 - 240)247 (68 - 314)
definitionCHROMAT_FILE: MSMg01no096_i11.b1 PHD_FILE: MSMg01no096_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005CHROMAT_FILE: MSMg01no096_i11.g1 PHD_FILE: MSMg01no096_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,182,591 - 145,182,760)(145,312,780 - 145,313,026)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGATAATGGGCGGAATTCC
ACTGACAATTTCTCAACTACTCTAAGTTAGTATTGCTGTATAGCTTTTGA
GTATAAGAATTATCTTATTGCCTCTAATTCGACTTACGCATTATAGGAAA
TGTATGAAAAGGATCCTATATTTTATAGTTAAGAGTTTAAGGTGCTACAG
AGGTGGGTCAGGTTAAAGGTGCTTCCTGATCTTCTAGAGGACCCAAGCTC
AGTTCATGGCATTCCTTCATGGCATGGCATAACTACCTATAGCTCCAGTT
AAGGGAGATAGAGCTCCCTCTTCTGGTCTGGATGAGCAGCTGCACTCATG
TGCGCACATTCTTTACAGGACATATGACAGAGAAAGAATTTAAAATATAT
ATATGCATGTTTTATTCCTATATTATATAATTCATTCAAATACCTAAATA
TATCATTTTTTTTTGATTCATCTAGACATTCCTCTTATCTTATACAAACT
TCTCAATTGAATCTTTTACCTCATATATTCCCGGGTATAACATATTTCTC
TTTTTATAAAACGATGATGTATAATTTTCTTTAACCAATAATAATCATTG
TAACTCAATTCCTATTCCTATGGATCTTTTATCTGTGTCTCCGTGTTTCC
ATTTGTGTATTGTTGTCCTCTCTCTCTCCCCTTACTCTCCCCTCTACCCC
TTCTCTCTCTACCTTTCCTTTCTTCTCTCTCCCCT
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAGAACGCGCCGACAGAGCTACGTCACTGCAACAC
GCGGCGCCTAGGCAGGCATTATAAAGGGCGGGCTCCCGGCGCTGGGGCAG
ACCGTGAGCGAGAGCGCCCCAGAGAAGCGCCTGCAATCTCTGCGCCTCCT
CCGCCAGCACCTCGAGAGAAGGACACCCGCCGCCTCGGCCCTCGCCTAAC
CGCACTCCGGGCGCATTTGATCCCGCTGCTCGCCGGCTTGTTGGCTCTGT
GTCGCCGCGCTCGCCCCGGTTCCTCCTGCGCGCCATAATGAGCTCCAGCA
CCTTCAGGATGTTCGCTGTCTCCGTCACCCTTCTCCACTTGACCAGACTG
GTGAGTTGGATTTTTTTTTCTTTTTTTAACCACTGCTTCCCGGTCTGCCC
TCATCGATTCCTTCTCCTGGCCCATGACCCTTCCCTGTTTGCAACGTCAT
ACTGCCACGCCTTTACTCCGTTGTTGCTTTATGCTCAGGGGGCCTCTTCC
TGGTGACTCCCCGCTGTTTTTGCTCTTTTTGCCGGGTAGTTATCGATAAT
CTTCCTGTTGTACGGATCCCCACAGCTATCATCTATGCTTCTTACTTTTT
TCCGTGCCTCCCCGATCCATGACTATCTATCCTTCGCCGTTTTCTCTCTC
CTGGATTCGGTTCTACCCTGTTCTCCTCCCCCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_i11.b1 MSMg01no096_i11.b1 CHROMAT_FILE:
MSMg01no096_i11.b1 PHD_FILE: MSMg01no096_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:54 2005
         (170 letters)



>mm_chr3_145182391_145182960
          Length = 570

 Score =  252 bits (130), Expect = 1e-71
 Identities = 160/170 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaagttagtattgctgtatagcttttgagtataagaattatcttattgcctctaattc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 201 tctaagttagtattgctgtatagcttttgagtatgagaattatcttattgcctctaattt 260

                                                                       
Query: 61  gacttacgcattataggaaatgtatgaaaaggatcctatattttatagttaagagtttaa 120
           | |||| |||||||| ||||||||||||||| ||||||||||||| ||||| || |||||
Sbjct: 261 ggcttatgcattataagaaatgtatgaaaagaatcctatattttaaagttacgaatttaa 320

                                                             
Query: 121 ggtgctacagaggtgggtcaggttaaaggtgcttcctgatcttctagagg 170
           ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ggtgctacagaggtgggtcaggttaaaggggcttcctgatcttctagagg 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no096_i11.g1 MSMg01no096_i11.g1 CHROMAT_FILE:
MSMg01no096_i11.g1 PHD_FILE: MSMg01no096_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:54 2005
         (247 letters)



>mm_chr3_145312580_145313226
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacgcgccgacagagctacgtcactgcaacacgcggcgcctaggcaggcattataaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaacgcgccgacagagctacgtcactgcaacacgcggcgcctaggcaggcattataaagg 388

                                                                       
Query: 61  gcgggctcccggcgctggggcagaccgtgagcgagagcgccccagagaagcgcctgcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcgggctcccggcgctggggcagaccgtgagcgagagcgccccagagaagcgcctgcaat 328

                                                                       
Query: 121 ctctgcgcctcctccgccagcacctcgagagaaggacacccgccgcctcggccctcgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctctgcgcctcctccgccagcacctcgagagaaggacacccgccgcctcggccctcgcct 268

                                                                       
Query: 181 aaccgcactccgggcgcatttgatcccgctgctcgccggcttgttggctctgtgtcgccg 240
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 caccgcactccgggcgcatttgatcccgctgctcgccggcttgttggttctgtgtcgccg 208

                  
Query: 241 cgctcgc 247
           |||||||
Sbjct: 207 cgctcgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)