BAC Information

Click to search

BAC

Clone NameMSMg01-096J12
Chromosome3 (Build37)
Map Location 137,041,833 - 137,042,081
singlet/doubletsinglet
Overlap geneEmcn
Upstream genePpp3ca, LOC668870, LOC100039447
Downstream geneEG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096J12.T7 (MSMg01no096_j12.b1)MSMg01-096J12.TJ (MSMg01no096_j12.g1)
ACCAG313234AG313235
length797801
length of high quality
(start - end)
245 (132 - 376)252 (130 - 381)
definitionCHROMAT_FILE: MSMg01no096_j12.b1 PHD_FILE: MSMg01no096_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:00 2005CHROMAT_FILE: MSMg01no096_j12.g1 PHD_FILE: MSMg01no096_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTGTTTTGTGTTTTTTTTTCGCCTTTTGCCCGCTCCGCCCCCCCACAT
CATCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAAAAG
CGGAATTCTCTCAGCTGATTACCAGAATAAAACATTTAAGGGGCCAAAAG
AGATAAAGAACATCAGGTCAGTTAACTAAAGAGGTCTAAGGAAACACCCC
CAATCAACAAAATGTCAGGAATCAAGACATAACTTTCAATAATAACTCAG
AATATGAAAAGTCTCAATTTCATAATAAAAGTACACAGTCTAGCAGAGTA
GATAGAAAATAGGATCCATCTTCTTTTTGATTTCAGGAAACATGTCTCAG
TATCAAAAGTGGACCTCACCTTAAGGAGCAAGAATGAAAAACAGTATTCC
AAGCAAATGGAACTAGGAAAAAAGTGGGCGCAGCTCATGTTACATCTGTC
AAAATGACTTATAGCCAATACTAGTCACACCACATAGGCAAGGGCACTAC
TTATTTATTTAAGAACAAGTCTACTAATAAGATATTGCATATCTCAACAC
AGAGTCTTCCTTCACAGGCAGCACCCAGTTTCGTTGAACCCTTGTTATTA
GATGTAATAAAACTGATCAACCCCCTCATGTGAAGGTGATTCCCCATAAT
TAACCCTCATCTATAAGGAAAAATGTTCTACTAAAATTAGAACCTGGAGT
TCTATGACCTTCTTAATCCAATGGACCTATCCGAAACTTTAACAAACACT
TCATCTCAAACTCTTATAGATCATGCTAATGCTCTTCATTATCCTTG
TTTTTTTTTTTTTTTTTTTTNTTTTCTTCCTTCCCCTCCCCCCCCCAACT
ACCACGATGATGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCGCCATCACTAAACAATGGTAGAGTTATGAAA
CATTATATATATATATGGTATCTACTTACGTTGATGCCAACTTCAGTCTG
TATCTCTGAACAATTCTTGAAAGCACTTGTTTACGAACTTGAAATTAACA
CAAACCACAGTTTCCATTAGCTACCATTTGTTCCTAATAATAATGATGTG
CATTTATTCTTCAGAATTTTAATGCATTCAGCACATAAAGAGACATTCAC
CATACCATATGTCGAGTGCTACACATATTGTAATGTGGTTACTGATAAGT
TAGCTGCAATCCAAAAGTGTTAACTCTTCTCATCAAAGGCATACAGGTGT
ACACATATGTATGCACACACAGTCCCCCAGACAGATTCTCTCTTCTGTGA
GGTGTGAGAGTCCTCTGACTATATATATATATATATGTACATATATATAC
ACACATAATCTTGCTTCCTATATGCATGTCATACCATGAACAAGATCTTA
TTTGCCCCTCTGATGTCTATCTACCCGGTTTTCTACCCTCTCTTACGCCT
TGACACATCATTTACATTAAGTTTTCTCCTCCCTTATGATTACTACTCAT
TCTTCACTATTATCATTGATTTCCCTTTATAATATTACCATACTTCTCTG
TATCACACTTTATTTTTTCTACTCCTTTTTCGACTTATATTTCCTCCTTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_j12.g1 MSMg01no096_j12.g1 CHROMAT_FILE:
MSMg01no096_j12.g1 PHD_FILE: MSMg01no096_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:00 2005
         (252 letters)



>mm_chr3_137041633_137042282
          Length = 650

 Score =  443 bits (229), Expect = e-129
 Identities = 245/251 (97%), Gaps = 2/251 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaatggtagagttatgaaacattatatatatatatggtatctacttacgttgatgcca 60
           ||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||
Sbjct: 201 aacaatggtagagttatgaaacat--tatatatatatggtatctacttgcgttgatgcca 258

                                                                       
Query: 61  acttcagtctgtatctctgaacaattcttgaaagcacttgtttacgaacttgaaattaac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 259 acttcagtctgtatctctgaacaattcttgaaagcacttgtttacgaactagaaattaac 318

                                                                       
Query: 121 acaaaccacagtttccattagctaccatttgttcctaataataatgatgtgcatttattc 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 319 acaaaccacagtttccattagctaccatttgttcctcataataatgatgtgcatttattc 378

                                                                       
Query: 181 ttcagaattttaatgcattcagcacataaagagacattcaccataccatatgtcgagtgc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcagaattttaatgcgttcagcacataaagagacattcaccataccatatgtcgagtgc 438

                      
Query: 241 tacacatattg 251
           |||||||||||
Sbjct: 439 tacacatattg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 650
Length adjustment: 9
Effective length of query: 243
Effective length of database: 641
Effective search space:   155763
Effective search space used:   155763
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)