BAC Information

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BAC

Clone NameMSMg01-097C13
Chromosome3 (Build37)
Map Location 126,413,726 - 126,413,968
singlet/doubletsinglet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097C13.T7 (MSMg01no097_c13.b1)MSMg01-097C13.TJ (MSMg01no097_c13.g1)
ACCAG313662AG313663
length1,084847
length of high quality
(start - end)
---245 (129 - 373)
definitionCHROMAT_FILE: MSMg01no097_c13.b1 PHD_FILE: MSMg01no097_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:48 2005CHROMAT_FILE: MSMg01no097_c13.g1 PHD_FILE: MSMg01no097_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTTTTATGGGGTGGGGGGTGGGGGGGGGGGNNNNNGGGGGGGTNNNNN
NCATATCCATCNNNNNNNNNNATTTTCCNNNNNCTTATTTATAATTTGTG
GGCGCNTAANANGGAGGGACTANAGTTCCNGATTCGTTTNNGGNAANNNA
GNAANNCCGTTTTCATAAAATGGGGTGGGGNNNNNNAAGGGNNNNNAAAN
GGNNNNNAAGGGNNNNGGNNGGGAGGTTTTTGTTTCTCTTTATTGTTTAA
GTATAGNNAGNNATTTGCAGTGAGAGATATGTGATATATGTGGGGTGTTT
ATTCTAGTTAGTATATGGTCTGGAGAACAGATAATGATTTTTGGTTCTAT
GCAGGCACAGAGTTTAGGTTTGGAGTATGGGTTGTGATTTATTGGTGCGG
TCGGGGTTTGTTTTTGATCTTCTTCTGGTTGAGGGTGTGGAAGTAGTATG
TGGAGAGATTTAGTTTTTAGTATTAGGTGGAGGTGAAAGAATTGTTTTAT
TTTTTTTTGGAGCGAGGGNNCGGAGAGAAAAGAGAAGAGGAGGGGGGAGT
TTTTTTTTTTTTGTTCCGCCCCCGCCACACCCAAGGNGGGGGAGGGGGGG
AGGNGGGGGGAGGAGNGNNAGGGGCGGAGCGTTCGAATTAAGAAAAGAAA
AAAAAAAGGGGTTGTGTGGTGGTGGGGTGGGGGGTGTGATTATTGCTTTA
CTTCGTTCTTATGTTTTTATGAGATTTAGTTTTGTAGTAAAGTTTAGTTG
TGGGTGTTTAGAGGTGTGTTTGTGTTTTTAGCCGTGTGCGTTTTCGATTA
AGAGGTGTGTTTTTGTGGGGGGGGGGGGGCTGGATTTGTTACTCTGTGTG
TGTATAAGTGATTTGGGTTGCGCGTTTTGTTTTAGGCGTTGGGTGGTTTT
AATATGTTTGTGGTGTGGTGTGTTGGGCTGTTTGTGGGTTGTGATTTGTG
CTGGTTGTGAGATGAAGAGGTATATGTGTTTTTGTATAGCGGGTGTGTTC
GTGTATAAGNGANNGTTGTGGTGGTTAACGGGCGTGTTGTTGTTTGAAGT
AATATTTGACGGAATTGATGGGTTGTTCGCGGGG
AAAACAACAACACACAAAAATTAACGATATTCGGCCCCTTTTCCTTTCCC
NNNNACCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAGGGAGACCAGGAGGAAA
TGCAGAGAACAAGCTGGGGCGGGGAGGGGAGGTTGTCTCTGAGAAAACAA
GACATGAATTAGATGGAGAAGGTGTGAGCCAAAACTGAGTGTGACCAGCC
TAGGCAGAAAGTAAGCCCTCTCCAGCAGAGTCCACAGCAGATGAGCTCGG
AGGCATGCTTTTGTGGAAGGATACCCATAGTGCTTTTGTGGGGGCCATCA
CTAAGGGCTTTGGTTTTTTCCTGCAGTATATGGGAATTGACAATAGGGTT
ATGGGGAGGAGAGGATGTATTTTACCCCCTTACAACACAAACATGGCATG
AAGATACATGGTTGAAGAAGCTCCAGACACCCTGTACATTTTCCGGATTG
ACCGCAAGCCTTTAATGACCGGCTATATTCTCCCGCTATGTGCCTCGCCC
ATCGCATGCCTGGACCCTGACCCCGGCCCTGTGCATATTGTACCCCACTT
CACGTACATACTCCCCCACCTCAATTGTTTTGTTCCGGCCTTTAGTACAG
TTTGGCCCCTTCAGTATCCTGAGGCACAAATCTCCTATAACCAACGTAAC
CCCCCATTCACTCTTTTCCTTTCCCCCCCGGCGTTATATCTTGGGGTTTC
CTCTCTTTCTCCCCTACGTTTCCCCCCTGCCCATATCCCCTTACTCTGTA
TGCCTTGTGTCTTTGTGCCCCCCCACTATCTCCTCTCCCTTCCTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_c13.g1 MSMg01no097_c13.g1 CHROMAT_FILE:
MSMg01no097_c13.g1 PHD_FILE: MSMg01no097_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:48 2005
         (245 letters)



>mm_chr3_126413526_126414168
          Length = 643

 Score =  422 bits (218), Expect = e-122
 Identities = 238/246 (96%), Gaps = 4/246 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagagggagaccaggaggaaatgcagagaacaagctggggcggggaggggaggttgtct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 443 aaagagggagaccaggaggaaatgcagagaacaagctggggtggggaggggaggttgtct 384

                                                                       
Query: 61  ctgagaaaacaagacatgaattagatggagaaggtgtgagccaaaactgagtgtgaccag 120
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 383 ctgagaaaacaagacatgaattagatgg---aggtgtgagccaaaactgagtgtgaccag 327

                                                                       
Query: 121 cctaggcagaaagtaagccctctccagcagagtccacagcagatgagctcggaggcatgc 180
           |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctaagcagaaagcaagcgctctccagcagagtccacagcagatgagctcggaggcatgc 267

                                                                       
Query: 181 ttttgtggaaggatacccatagtgcttttgtgggggccatcactaagggctttgg-tttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 266 ttttgtggaaggatacccatagtgcttttgtgggggccatcactaagggctttggttttt 207

                 
Query: 240 ttcctg 245
           ||||||
Sbjct: 206 ttcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 643
Length adjustment: 9
Effective length of query: 236
Effective length of database: 634
Effective search space:   149624
Effective search space used:   149624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)