BAC Information

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BAC

Clone NameMSMg01-097J01
Chromosome3 (Build37)
Map Location 44,435,735 - 44,436,035
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097J01.T7 (MSMg01no097_j01.b1)MSMg01-097J01.TJ (MSMg01no097_j01.g1)
ACCAG313963AG313964
length697706
length of high quality
(start - end)
342 (114 - 455)301 (73 - 373)
definitionCHROMAT_FILE: MSMg01no097_j01.b1 PHD_FILE: MSMg01no097_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:21 2005CHROMAT_FILE: MSMg01no097_j01.g1 PHD_FILE: MSMg01no097_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCCTATTATCGAGAGAGATCCGCGGAATTCTAAT
CCATCACCAGAAATGCTCTGGCAATGTATAATATCCATAGATATGATCCA
TCTGGAATACAGAAATGCAAGGGATTACAGTATGATATAGCTGGAGTATA
CAATGTCTTATCATACAACTGCAATTATTTTTTAATTGGATATTTTATTG
TTTTTTACATTTCAAATGTCATCCCTCTTCCAGGTTTGCCCTCCATAAAC
CCCTCTCCCCTCTCCCTCCTCTTGACACTGTGAGGTTACTCCCCCACCCA
CACAATTCCACATCTTAACCCTAGAATTTCCCTATGCTGGGGCATCAAGC
CTTCACAGGACCAAGGGCCTCCCCTCCCATTGATGCCAGATAAGGCAATC
CTCTTCTACATATGCAACTGGGGTCATGGGTCCCTCCATGTGTATTCTTT
GGTTGGTGGTTTAGTCCCTGACAGCTCTGGGTAGGTCTGGTTAGTTGATA
TTGTTGTTCTTTCTATGGAGCTGCAAAACCCCTTCAGCTCCTTCAGTCCT
TCGCCTAAATCCTCCACTGGGACAACTGTAATTCTTTACAATAACAGACA
CGTTGGTTTGAAAAAGGAAATAACTATGCTTAAAAGTGACCTCTAATTAA
AGGGCACACCACGTGTAAGATCCGAGAAAGACTTAAGATAATGAGCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATTAAGACTGAGGAAATATATAGATAA
CCTGCATCTCCATGCAAATGATCAGAGGATGGATGTCCATTGTCCATTAG
GTTTTAGGTGACTTTTGATCTTTTACATTTATACATGAAGAATATTAATT
TATATCTGACAATTGTATATTTTTATAAAAGCAAGCCTTCATCAAGATTT
AATACCCACAATTTTTCTTAATTTCAGAATGTTCTGTTCATTCAGTACCA
AGACAGACTAATGAGATGGAAAAGGACAATAATGAAAATAAATATTCATC
CAATGAACAATGCAATAAGCTCAGAGTGGTAGTAAAAGAAAGTCAATTAA
TTTTTATGAGTATTTTAAAATTTCAATTTTACATGATTATTTTCAGAGTA
ATGAGTAAATGTTGTTATAACACAACATATAGTCACAGATGGACTTTTTT
AAAATAGAAAATCTGCATATATATTTAATATGATTTTACTCATATTCGCA
TAAAAATCTTTGTAACAGTCAGCAATCTAAATATTCTTAAAATAGAATCT
GAGAGAAACACCTTTAACTCAGACAATTAATGCGAAAATTTCATCCCTTT
TCTGCAGTTATATCTGCTTCAGCTGAAAAGTCACCAATGGCCAGTTCAGA
TATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_j01.g1 MSMg01no097_j01.g1 CHROMAT_FILE:
MSMg01no097_j01.g1 PHD_FILE: MSMg01no097_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:21 2005
         (301 letters)



>mm_chr3_44435535_44436235
          Length = 701

 Score =  567 bits (293), Expect = e-166
 Identities = 299/301 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattaagactgaggaaatatatagataacctgcatctccatgcaaatgatcagaggatgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tattaagactgaggaaatatatagataacctgcatctccatgcaaatgatcacaggatgg 442

                                                                       
Query: 61  atgtccattgtccattaggttttaggtgacttttgatcttttacatttatacatgaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtccattgtccattaggttttaggtgacttttgatcttttacatttatacatgaagaa 382

                                                                       
Query: 121 tattaatttatatctgacaattgtatatttttataaaagcaagccttcatcaagatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattaatttatatctgacaattgtatatttttataaaagcaagccttcatcaagatttaa 322

                                                                       
Query: 181 tacccacaatttttcttaatttcagaatgttctgttcattcagtaccaagacagactaat 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tacccacaatttttcttaatttcagaatgttctgttcattcagtagcaagacagactaat 262

                                                                       
Query: 241 gagatggaaaaggacaataatgaaaataaatattcatccaatgaacaatgcaataagctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatggaaaaggacaataatgaaaataaatattcatccaatgaacaatgcaataagctc 202

            
Query: 301 a 301
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)