Query= MSMg01no097_j22.b1 MSMg01no097_j22.b1 CHROMAT_FILE:
MSMg01no097_j22.b1 PHD_FILE: MSMg01no097_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:25 2005
(582 letters)
>mm_chr3_154362901_154363881
Length = 981
Score = 1065 bits (551), Expect = 0.0
Identities = 572/579 (98%), Gaps = 1/579 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctctcctgtacctctttcccagaagcaggagctctgtgccccttgcaccaagg 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggaattcctctcctg-agctctttcccagaagcaggagctctgtgccccttgcaccaagg 723
Query: 64 cccccaggacacctccttgtttgcaggatccaatttgacacttcccttttctatgcaatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cccccaggacacctccttgtttgcaggatccaatttgacacttcccttttctatgcaatc 663
Query: 124 gctgtgccatatttctataaacagtgtcttgcagccacaggacagggtcccctcttggca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gctgtgccatatttctataaacagtgtcttgcagccacaggacagggtcccctcttggca 603
Query: 184 cacagtgagtcagctactgttgagcgaggaatgcatgaacacctacagaaatgtcaggga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cacagtgagtcagctactgttgagcgaggaatgcatgaacacctacagaaatgtcaggga 543
Query: 244 aaactgtagcagattcaagccaatgggaggcactgtgccaatctgtagacaatcctagct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aaactgtagcagattcaagccaatgggaggcactgtgccaatctgtagacaatcctagct 483
Query: 304 gttctggtatattaacagattaggtatgtcttctgaaacatggctaggggctgaacagtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gttctggtatattaacagattaggtatgtcttctgaaacatggctaggggctgaacagtt 423
Query: 364 cctcattccactgttttccacgttggtggatatctgtagactctatggattgaacactcc 423
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 422 cttcattccactgttttccacgttggtggatatctgtagactctatggattgaatactcc 363
Query: 424 tgatctgaatgtgcagagtactctgaaagccgaaacccttaaacacaaacaccatgttta 483
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgatctgaatgtgcagaatactctgaaagccgaaacccttaaacacaaacaccatgttta 303
Query: 484 caatactttcaagttctgagcatctcatatttatctttctaactgtacatgttggtttgt 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 302 caatactttcaagttctgagcatctcatatttatctttctaactgtacatgttggttttt 243
Query: 544 gtgcatgacatatgcatcgtatgaaccgaatgtcttggg 582
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 242 gtgcatgaaatatgcatcgtatgaaccgaatgtcttggg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space: 555412
Effective search space used: 555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no097_j22.g1 MSMg01no097_j22.g1 CHROMAT_FILE:
MSMg01no097_j22.g1 PHD_FILE: MSMg01no097_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:26 2005
(440 letters)
>mm_chr3_154277587_154278426
Length = 840
Score = 797 bits (412), Expect = 0.0
Identities = 433/440 (98%)
Strand = Plus / Plus
Query: 1 taagccagcacagagagacactgcaaatgtcggagacaaaaccaagggcctgcgggggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 taagccagcacagagagacactgcaaatgtcggagacaaaaccaagggcctgcggggcga 260
Query: 61 tggctcacctccagggagctgggtgttctggggaccacatggaaaggagtaactcattac 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tggctcacctccagggagctgggtgttctagggaccacatggaaaggagtaactcattac 320
Query: 121 ccagcatgccccacataacgatgatagcgtcctgacagtatggctctacagtggccaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagcatgccccacataacgatgatagcgtcctgacagtatggctctacagtggccaggt 380
Query: 181 aactcagaaagtcaggctgccgtgtgtctctacagagatgagcttccttatggcacatct 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 aactcagaaagtcaggctgccgtgtgtctctatagagatgagcttccttatggcacatct 440
Query: 241 ggcttcctcagcgactcggagatcaatctgcagggatttcacgtgtcatactatttacca 300
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 441 ggcttcctcagcgactcggagatcaatctgcagggatttcacatgtcagactatttacca 500
Query: 301 cgaaagcccacagttgtctctgtagggcttgaaaagacagctaaactcattgttaaccat 360
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaagcccaaagttgtctctgtagggcttgaaaagacagctaaactcattgttaaccat 560
Query: 361 ctccaaaggctggttttggatgagttcaatttaatctaataaccgaaggtttgaaacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccaaaggctggttttggatgagttcaatttaatctaataaccgaaggtttgaaacaca 620
Query: 421 cgtgtttatttaaatggcta 440
||||||||||||||||||||
Sbjct: 621 cgtgtttatttaaatggcta 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
