BAC Information

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BAC

Clone NameMSMg01-099C07
Chromosome3 (Build37)
Map Location 158,242,901 - 158,243,383
singlet/doubletsinglet
Overlap genenone
Upstream genePtger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
Downstream geneLOC100041008, LOC668905, LOC668907, Depdc1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099C07.T7 (MSMg01no099_c07.b1)MSMg01-099C07.TJ (MSMg01no099_c07.g1)
ACCAG315148AG315149
length796677
length of high quality
(start - end)
---482 (58 - 539)
definitionCHROMAT_FILE: MSMg01no099_c07.b1 PHD_FILE: MSMg01no099_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:29 2005CHROMAT_FILE: MSMg01no099_c07.g1 PHD_FILE: MSMg01no099_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGCACTTTGCTTGTGTAATTGCGCCGGCCCGCCCGTGTTGTTCTTTCC
TATTTCTCTCCCCCCTTTCTCTTTCCCGCCCTCCCTCGTTCTTTTCTCTC
CCCTTGCCTTTCCCTTTGCGGCGCCGGCCTACTTTTCCTCTCTAATGTTT
ACCCACCGTTTGTGTTGCTTTGCGCGTGCTGCTGGTGTCTCTCGGAGGTG
TTGTATTCTCGGCGGGTAGCCTGCCCGGCCGGAAACGACCTTCTCTAAAT
AAAAATATTTTGGCCGGGGGGCCCCGGCCCTTTAAAAATAACGGGAACCT
TTCCCAACCTTTAATTTTGTTTTCCCCCCAGAAAGAGGGAAAATTGCGCC
GGGNCCCGGGGCNAAAATTTCCTTCCAAAACCCTGTGNTTTAGTTCCCCA
CCCCTCCCTCCAAGGGNAAATTGGGGGGNNNCCCCAAACCCCAAAAATAA
AAAGGGGCCCACCCCCTTTTAAAAAAGGGGGAAAAAAATTGGGGTTTTTC
CCAAATAACCCAAATTTCCCCCTTCTTTTTAAGGGGCTTTTTTAAATTTT
CCCAAGGGGGGGTTTAAAAAAAACAATAGGGGCCAAAAAGGGTTCCTCCA
TAAAAAAAACACCACAAATACCCCCCCTCCTTGGGGGACAAAAAAAAAAT
TTTTTCCCCTCAACCCGCCCTTTTTTTGTGGAAAAAAACCCGCCCTCGGC
CTCTTTTTTCTTCAAGAGGAAAAAAAAGTGGGGGGGCGGCGTCTCTTTTA
ATATAAGGAGACAACGAGACCTTTCTTTTTATTAAATGCCGCAATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAG
AAAAACCATTGGTTGAGAATGACATGGACCAGTGTACTCAGACTTGGAAG
ACTTAGTTTGTTTGTTCTTGCAGAATAAAAGAAAACTAGATAAAGTTTAC
CACCAGTCATTTGGTTTAAGATTGATACATGATTTCAAATAAAAATGAAT
AGAATAATTTACCCTTGTAAGCCAAAAACATTTTAAAAGCAATAGGTAAT
AAAATGGTACCTTGAGACTAGATAATGTGAAAATTATTATGGAAGCAACT
ATTTGTAGGTGNTAAATCACAGTCATTATTTTTTATCACAGACACTGAAT
CTCCATGCAAATATTACTTACTTAAGCATAATAGGGCATTTTATGATGTT
AATTGTATGTACCTAATGTAACCAGGAAGATTGGTACTTAACTTTCAGGT
ATTATTTTTTCAAAACATATCTCTCTCTAATCCTGTTTATCTAAAGCACA
CATCATAATTAAAGATTCTCATGCTTATGCTAATTCTAAATGTAAAGAAC
TGACATTTTCATAGAAGTAAACAAAAACTTTATAAATGTATCAGTTATGG
CATTAAAATCTCTGTAATTTTAAATTACACTCTTCTATTTTGTTACCATC
ATATTCCTTTCCATATCTCTGTAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_c07.g1 MSMg01no099_c07.g1 CHROMAT_FILE:
MSMg01no099_c07.g1 PHD_FILE: MSMg01no099_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:29 2005
         (482 letters)



>mm_chr3_158242701_158243583
          Length = 883

 Score =  864 bits (447), Expect = 0.0
 Identities = 474/487 (97%), Gaps = 9/487 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggttgagaatgacatggaccagtgtactcagacttggaagacttagtttgtttgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggttgagaatgacatggaccagtgtactcagacttggaagacttagtttgtttgttc 260

                                                                       
Query: 61  ttgcagaataaaagaaaactagataaagtttaccaccagtcatttggtttaagattgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcagaataaaagaaaactagataaagtttaccaccagtcatttggtttaagattgata 320

                                                                       
Query: 121 catgatttcaaataaaaatgaatagaataatttacccttgtaagccaaaaacattttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 321 catgatttcaaataaaaatgaatagaataatttacccttgtactccaaaaacattttaaa 380

                                                                       
Query: 181 agcaataggtaataaaatggtaccttgagactagataatgtgaaaattattatggaagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaataggtaataaaatggtaccttgagactagataatgtgaaaattattatggaagca 440

                                                                       
Query: 241 actatttgtaggtgnta-----aatcacagtcattattttttatcacagacactgaatct 295
           ||||||||||  |  ||     ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actatttgta--t--tattaaaaatcacagtcattattttttatcacagacactgaatct 496

                                                                       
Query: 296 ccatgcaaatattacttacttaagcataatagggcattttatgatgttaattgtatgtac 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccatgcaaatattacttacttaagcataatagggcattttatgatgttaattgtatgtac 556

                                                                       
Query: 356 ctaatgtaaccaggaagattggtacttaactttcaggtattattttttcaaaacatatct 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctaatgtaaccaggaagattggtacttaactttcaggtattattttttcaaaacatatct 616

                                                                       
Query: 416 ctctctaatcctgtttatctaaagcacacatcataattaaagattctcatgcttatgcta 475
           |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 617 ctctataatcctgtttatctaaagcacacatcataattaaaaattctcatgcttatgcta 676

                  
Query: 476 attctaa 482
           |||||||
Sbjct: 677 attctaa 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space:   412056
Effective search space used:   412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)