BAC Information

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BAC

Clone NameMSMg01-099L04
Chromosome3 (Build37)
Map Location 136,141,845 - 136,142,325
singlet/doubletsinglet
Overlap genenone
Upstream geneManba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream genePpp3ca, LOC668870, LOC100039447, Emcn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099L04.T7 (MSMg01no099_l04.b1)MSMg01-099L04.TJ (MSMg01no099_l04.g1)
ACCAG315574AG315575
length672671
length of high quality
(start - end)
526 (47 - 572)481 (80 - 560)
definitionCHROMAT_FILE: MSMg01no099_l04.b1 PHD_FILE: MSMg01no099_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:18 2005CHROMAT_FILE: MSMg01no099_l04.g1 PHD_FILE: MSMg01no099_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAGCGAGTCCACAAATTCTTTATGTCTGCCTTGATCCAGTGGTC
AATCAGTAGGGAGTTCTTAAAATTCCAAGAGTTTGCAAGCTTTCTGTTGT
TTTTATTGTTTAAATCCAGTTTTAATCTGTGGTGTTCTTATAGAAATACA
GGAGATTATTTCAATTTTCTCATATCTGTTGAGACTTATTTTGTGAGACA
CTATATGGTCAATTTTGAAGAAAATTCTGGGAGGTGCTGAGTACAATATA
TATTCTTTTATGTTTGGGCAAAATGTTCTGTAGACATTTATTAGATCAAT
TTGAGATATAACATCTGTTTCTAGTATTTCTCGTTTTAATTTTTATCTAG
ACGACTTGTCCATTGGTGAGAGTGGGCTATTGAAGTCTCCCATTATTACT
TTATGGGGTTCAATGTGTAATTGAAGATTTAGCAATGTTTCTGTTATAAA
TGTTGTTGCCCTTTTGTTTGGGGCATAAACATTCATTATTGATGCCTCAT
CTTGGTGCTTCTTTCTTTTGAGTATGAAGTATTTTCCTGTATTTCCTTTG
ATTAGCTTAAGCCAGAAGTCAATTTTCTCCAATATTTTGCTACTAGGTGA
TGTCTATCTCTGATGTTGAGGN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTAATGACCTGCTACTTTC
ATGACCAGCTCTCAAATAAAGGCAGGACTTGGCTTTCTTGGAGTGTGCCA
ATGAATGTTCTTGGTTTCTGCCATGATACTGAGCACCGAAAGAAGATACG
GAAGAAGATACAGTTGTTTTTCATGAGAAGAGAATTGAAAAATGTTCTCA
TTTCTCCCACGTGTTCTCATTTCTCTCATTTCTTTCTTGCCTTGTATTTA
TGTGTACTTATCCATCAATTGCTGTCCCTTTTACTCCAAAACAGACATTT
CAGAAAAATCCTTTGATGTTTGGCCACAGACGCAGACCCTCCATGACCAA
ACAAAGCCATGCACCCCAACTCTCCATCCACCACAGTTAACCTCCTATTA
GTGTTTCCCAATATTCACTGAATTAAAAAAGGGTTGCTATTTCTTCTCAT
TCTGTTTTCCTCACACTATGCATCCAACCTAACAGGAATTCTATCTATTC
AACATCTAGAATGCACCCTGAAGTCTAAAAACCTCTCTATCTCTACTATT
TGAAATGTACTTCTGCCCAACATATTCTGATATTACTTCATCCTCTCTTA
GTTATGCTGCATCATGTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_l04.g1 MSMg01no099_l04.g1 CHROMAT_FILE:
MSMg01no099_l04.g1 PHD_FILE: MSMg01no099_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:18 2005
         (481 letters)



>mm_chr3_136141645_136142525
          Length = 881

 Score =  922 bits (477), Expect = 0.0
 Identities = 480/481 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttaatgacctgctactttcatgaccagctctcaaataaaggcaggacttggctttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttaatgacctgctactttcatgaccagctctcaaataaaggcaggacttggctttctt 260

                                                                       
Query: 61  ggagtgtgccaatgaatgttcttggtttctgccatgatactgagcaccgaaagaagatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtgtgccaatgaatgttcttggtttctgccatgatactgagcaccgaaagaagatac 320

                                                                       
Query: 121 ggaagaagatacagttgtttttcatgagaagagaattgaaaaatgttctcatttctccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagaagatacagttgtttttcatgagaagagaattgaaaaatgttctcatttctccca 380

                                                                       
Query: 181 cgtgttctcatttctctcatttctttcttgccttgtatttatgtgtacttatccatcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtgttctcatttctctcatttctttcttgccttgtatttatgtgtacttatccatcaat 440

                                                                       
Query: 241 tgctgtcccttttactccaaaacagacatttcagaaaaatcctttgatgtttggccacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctgtcccttttactccaaaacagacatttcagaaaaatcctttgatgtttggccacag 500

                                                                       
Query: 301 acgcagaccctccatgaccaaacaaagccatgcaccccaactctccatccaccacagtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acgcagaccctccatgaccaaacaaagccatgcaccccaactctccatccaccacagtta 560

                                                                       
Query: 361 acctcctattagtgtttcccaatattcactgaattaaaaaagggttgctatttcttctca 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 acctcctattagtgtttcccaatattcactgaattaaaaaagggttactatttcttctca 620

                                                                       
Query: 421 ttctgttttcctcacactatgcatccaacctaacaggaattctatctattcaacatctag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgttttcctcacactatgcatccaacctaacaggaattctatctattcaacatctag 680

            
Query: 481 a 481
           |
Sbjct: 681 a 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)