BAC Information

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BAC

Clone NameMSMg01-099N21
Chromosome3 (Build37)
Map Location 32,808,817 - 32,808,954
singlet/doubletsinglet
Overlap geneUsp13
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5
Downstream genePex2, EG545512, LOC100041058, Ttc14, Ccdc39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099N21.T7 (MSMg01no099_n21.b1)MSMg01-099N21.TJ (MSMg01no099_n21.g1)
ACCAG315704AG315705
length746823
length of high quality
(start - end)
138 (184 - 321)81 (143 - 223)
definitionCHROMAT_FILE: MSMg01no099_n21.b1 PHD_FILE: MSMg01no099_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:32 2005CHROMAT_FILE: MSMg01no099_n21.g1 PHD_FILE: MSMg01no099_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGAGGCGCG
GAATTCCATCATTCCCAAAGTCTCGGACTCTGAACTGGTCTGTCACTAAC
CTGTATCTTCCCTGCTCTGTCTCAAGTTCCCCCTCAGAAGGACCGTATAT
GAGACTCAGGCCTCAATGCAAGGTAGCTATGAGAGCTCAGCCTTGCAAAG
GGATTGATCTAGGATTATCCTGGCTCTCTGAAGAAACATACAGTCCCTCC
AATTGGGTTCTCTGGCTGCCTGAGAAGCCTAAATATATATCATTCTCATT
TAAATGAAGCCAAGACTTCCAGTTTACAGAAAGTCAACAAAATTCACCTG
CTATTATAGCATTTTCAACTAACGAAAAAACTTATCTTTCAGCTACAGTG
TGTGAGTGCGTATGCGTGCGCATATGCGTGTGTGCGCGATAGAGAGCAGC
CAGATAACTTTTCCCCCTTTATTTCCCCTCTCTTCCAGCGTGTCTCATTG
CCTTTTTCTTTCCCGCTACCCACATGCTTCTGCCTCGCGCCCTTCTTTTT
GCTTACCTTTCCTCCCCCCGCGCTTTTTTCTTTCTCCCCCCCATCTTTCC
TTCTTCCTCCTTTCCCACTCTCTCTCTTGTTCCCCTGTTCGTGTCCTCTT
TCTTTTCTCGCCTCTTCTCTTCTCGTCCCCTTCCCCCTCTTGCTCTTTCC
GCCGCTCCTTCCATCTCCCCTCCCACCTCTTCGCTTTTTCCCTCTN
CCCTCTCCTCCTTTTTCCTCCTTTTTTTCCCTCCTCTCCTCCCTTTTCCC
CCGTTGTTCCCNNNNCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCTA
AACCCTGTTAGCTGCTACAGGTGATTCCAAAATCCAGACAGCTCCCATCT
TCAGCTGTGGATCGTTGAACGTGGCAGGATTAGTGCAGGTGGAGCTGGCC
TCTATATCCATGCAGTAGCATCCTCGAATCCAGATAACTGTGGCTTGAAC
ACATTTGGTAAGTAAATTGCTCCTGTAACCTTTGTTCTTGGTATTACTCC
CCTATCAATGCAATATAGCACTGGTTTACATGGTATTTTTTTGTCACCAG
CATTACCAGACATAGTACATAGGAGAACTTGCGCCCCACTGCCACCCCGC
GTTTCACTGAAGTTCTCTGATCATCTGAAAGTTTTGTCGTCAATTAACCT
ACAACTCGTTCCCCATGGATACTGACACCCAATGATACTTGTGCTTACCC
CTGTTTGTGCGCCCTGCCATATTTAACGCGCTTTCCGTTCGTTATATCGC
CAGCTTCTGTTTCGATTTTCGCGCCGACTTTGCCACCCGTTTAACCTCCT
CTACTGGCAACCTTTTTTTTCCTTCCGCTTATCGCTTGTCTTTCTCATGG
TCTCCTCTGGCCCCCGCTTCCGACCCTTTTTTTTTTTGTCAACTGTTTTT
CCTTCACTTCGCCAAATTCTTGAATCTCGCACACTGCTCACTTTTTTTTT
TATACACCCATCCTCCATAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_n21.b1 MSMg01no099_n21.b1 CHROMAT_FILE:
MSMg01no099_n21.b1 PHD_FILE: MSMg01no099_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:32 2005
         (138 letters)



>mm_chr3_32808617_32809154
          Length = 538

 Score =  259 bits (134), Expect = 4e-74
 Identities = 137/138 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctcagccttgcaaagggattgatctaggattatcctggctctctgaagaaacatacag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 338 agctcagccttgcaaagggattgatctaggattatcctggctctctgaagaaacgtacag 279

                                                                       
Query: 61  tccctccaattgggttctctggctgcctgagaagcctaaatatatatcattctcatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tccctccaattgggttctctggctgcctgagaagcctaaatatatatcattctcatttaa 219

                             
Query: 121 atgaagccaagacttcca 138
           ||||||||||||||||||
Sbjct: 218 atgaagccaagacttcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)