BAC Information

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BAC

Clone NameMSMg01-100H01
Chromosome3 (Build37)
Map Location 131,930,736 - 131,931,056
singlet/doubletsinglet
Overlap genenone
Upstream geneHadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1, Dkk2
Downstream geneLOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100H01.T7 (MSMg01no100_h01.b1)MSMg01-100H01.TJ (MSMg01no100_h01.g1)
ACCAG316142AG316143
length1,025785
length of high quality
(start - end)
---317 (144 - 460)
definitionCHROMAT_FILE: MSMg01no100_h01.b1 PHD_FILE: MSMg01no100_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:18 2005CHROMAT_FILE: MSMg01no100_h01.g1 PHD_FILE: MSMg01no100_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCCCTCCCNNNNNNTCTCCTTTTCTCCCCCCCCCCCACACACCCC
CCACACCCANNANTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
CCACAGAGGATCCGCTGGAATTTCTTTTTCATTCCCCCTTTAACTGTTGC
ATAGCCGAGATTTAATATACGAATGCCTACACCAACTCTTAGACACTATT
ATTCTCAGTGTTAAGCTAATCGAGCGTAGCTCTCACTTGTTTTCTGATCC
ATGTTTATCTTGTCACACTGCATACTGAGATTAGGCGACCATCACACTTT
CTCCCTCAATCTGTCTCTATTTAGATAATCACATTTTTCCCTACTACAAC
AGATGAACATGTTTGTATACCCTATTTTAGAGATAGGCGCCCCCCCGCAT
GTATGATAGTCTTTCCCACTCACCAGGATCCATCTTGTATTATCCGGCAT
TGATTATATTACAACTACCCCCCAATCATTCTACATACTATTAGGCCATT
CTTCCACCGCCGCAGCCCCCCCAGCAATGCACAAACTCAATGAGCTATAA
ATGAACAAATCTCTCGTGCTATTGAATGATCCTCCCAACTAATACGACGT
TTCTTTGCTAACACCTTCCACCACTAACATTTAGACCCCGCATACCTTTT
CCCTATGCACAACCTCAATCAATCCATTGCACCGCTCACCCCTCTCTGGG
CATCACCTGATCCATATCCTGCTATCATAAACCATATATCTCTCAAACGA
ATATCGCCCGCACCCTTTAATTTCTTGGATCCTTCTCCCCTATGGTCTCC
GCCTACCACATTAACCTCCAACCTCCACTCCCCCCTTATGTATATTTGTT
TCTCCCTCGCATTTCCTATTCACTCCCGCCCGATACATATTTACCCCGAC
TCTCCATGTTCATCTACCGCCTTACTATATCGCACTCTACGACAGCCTAA
CATGTTATGTACCCCCCTTTTTTCCCCGATTCTTGTCTCTCCATTCCTCC
CCCCCCCCGCGCTTCACCTTCTTTG
NNNNNNNNNCCCCNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCNCN
CCCACACCNNNNCCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGGA
ATCAAAGGATGACTGGAGGGAGTCAGTTCTCTCCTTGTAGCATGGATTTT
TGAAGATTAATCTAGGGTGAGGTTTGTGACATAAAGTGTTTTTACACTCT
GAGCCATCTTGTAAATTCATACTTACTGATTTTTAAAGACTATTTTTTCT
TGCTTTTCAAAAAATTTAACCAATTTTATAATCTTATGAAGATCCTCTTC
CTGAAACTTTATGGCAGTTTTGTCTTTTAGCATCTTAATTACCATTTTCA
TTGACATCATGAAAATCTATCTTGTAATACTAATGTGAAGCTAATAAGAA
AAGTAAAAAAAAAAAAAAAGACCACATCCTTTTATGACGAAACATGTGAT
TTTAGATGATTTATTCCCTGTATCTTTGTATTGAGTTGGAGGTTTACCTT
TGAGTCTGTATTCTTTTCCAACTGCAAACTCTTCTTTTTAGCTCGATAGC
TTAGCTTAAAGAGGTATTCAAGCCTCGCTGCTTACTGCCCCATACATTGT
TGCTACCACTGGAATCCCCCCCAGAATCTTTCTAACCTCTAATCTCCGGT
TTGCTCGACCGCAAAATTTGCTGTACGTACATTTCCAAACTATCCTTTTT
TCTACCGCTTGGACAATCTTTAACCCTCTGCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_h01.g1 MSMg01no100_h01.g1 CHROMAT_FILE:
MSMg01no100_h01.g1 PHD_FILE: MSMg01no100_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:18 2005
         (317 letters)



>mm_chr3_131930417_131931137
          Length = 721

 Score =  540 bits (279), Expect = e-158
 Identities = 309/321 (96%), Gaps = 4/321 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtggaatcaaaggatgactggagggagtcagttctctccttgtagcatggatttttga 60
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ctgtggagtcaaaggataactggagggagtcagttctctccttgtagcatggatttttga 581

                                                                       
Query: 61  agattaatctagggtgaggtttgtgacataaagtgtttttacactctgagccatcttgta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 580 agattaatctagggtgaggtttgtgacataaagtgtttttacactctgagccatcttgga 521

                                                                       
Query: 121 aattcatacttactgatttttaaagacta----ttttttcttgcttttcaaaaaatttaa 176
           |||||||||||||||||||||||||||||    |||||| ||||||||||||||| ||| 
Sbjct: 520 aattcatacttactgatttttaaagactatttttttttttttgcttttcaaaaaacttac 461

                                                                       
Query: 177 ccaattttataatcttatgaagatcctcttcctgaaactttatggcagttttgtctttta 236
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 460 ccaattttataatcttatgaagattctcttcctgaaactttatggcagttttgtctttta 401

                                                                       
Query: 237 gcatcttaattaccattttcattgacatcatgaaaatctatcttgtaatactaatgtgaa 296
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 400 gcatcttaattaccattttcattgacatcatgaaaatctatcttgtaatagtaatgtgaa 341

                                
Query: 297 gctaataagaaaagtaaaaaa 317
           |||||||||||||||||||||
Sbjct: 340 gctaataagaaaagtaaaaaa 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 721
Length adjustment: 9
Effective length of query: 308
Effective length of database: 712
Effective search space:   219296
Effective search space used:   219296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)