BAC Information

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BAC

Clone NameMSMg01-100I18
Chromosome3 (Build37)
Map Location 40,070,498 - 40,111,299
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100I18.T7 (MSMg01no100_i18.b1)MSMg01-100I18.TJ (MSMg01no100_i18.g1)
ACCAG316217AG316218
length681694
length of high quality
(start - end)
550 (58 - 607)540 (73 - 612)
definitionCHROMAT_FILE: MSMg01no100_i18.b1 PHD_FILE: MSMg01no100_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:26 2005CHROMAT_FILE: MSMg01no100_i18.g1 PHD_FILE: MSMg01no100_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,070,498 - 40,071,047)(40,110,760 - 40,111,299)
sequence
GCGGCCGCTATACGACTCCTATACGGAGAGGATCCGCGGAATTCTGTAGT
ATCCACAGCTTGATTAATCTACAATAAAATCTTTTCTACTCAAGATTGTC
AAGAGAATTTTAATCATGCAATAATAACTAAGCAAGCCATTTTTTACTAA
ACATCAGGGTACTTTTAGCCCCAAGGATGCAGAAGGGGGCATAAATAGCC
TGTACATAGCTTAGAAGATGCACTCTGTACAATTTTCATGCTACTAATAA
GTTTACCCTATAGATGGTCTTTATTACCCCACAAATAAAGGATATTAAAA
GGATGAAAGAAAAGAGAAGAAAAGAAGAGAAAAGGAAAGAAAGGACAAGA
AAAAAGCAAACAGCTCTGTTTTGCAGGTAGTCCGAAGCATGTGAGTTGCC
TGTGCGCTGGGAACCGGTGCTTTGTGACTTTAAGAAACAGTATAAATTGC
ATTTGTTTGTGCCTGTTCATTGTGTAAATTTGTGAACCCTGTGCATTGAC
TCTAAGGGAACTCTCTGCTGAGCTCCAGCAATCCACACAACCACGTTGTC
AGCCTACTGTCAGCCTCTGCATGCCAGCCATTTTGGTAAGTGCTCCTAAA
TTTGATACAGGGCAAATAATATTTTATTATTTTCCCAGGGGGGAGAGAAA
GCTCTTTTTACAGAGCACAGACCAGGATCGC
GATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACACCAGTTCAGGGTTTGGCTGACAT
CCTGGAGCTTTGTGTGAGTATAAAATGCCAAGTGTCTCAGCGTGAGCCCC
GTTACCTACCTCTAATTCTTTCACACACAGATCTTCCAGATGTTTTTTGG
GGGAGGATGTGTCTCTTTATAATAAAAGTTATATCAGCCATCATTTCCAC
ATATTCCTATGGCACCCATTTGTGAGAATTTGTACTACATTCCCAAACAT
CTGCAGACAGTATCTCTACAATTACTTCTGAAGTTACTAGCCACCTGTCA
GCACAGGTATTACTACCCCATGCACTGTCAAGTGGGAATCAAAGTTTTTT
ATTGGCCACTAGAGCTCTCCTACAGACATGTTGTAGGCAGATAGGAATAT
TTTCAGCACATACTTTTATTAGGTGCTGTAAATTTAGAAGTTGAACACTC
CACAGTGAGTACATGAGCATATTTAAGGCATGTGCATGTATTCAGAACTC
ACTGAGAGGCTGGAATGTTGGCAGGGCCTTAGGTTAAGAGTTTGAGCTGA
AAATGAGATGCCTGACTCCTTTATCTCTTAAGCCAAAGGCAACTGGAGCT
GCTTAGGAGACCATCACTGTGTTTGCCTTATGGCAATGTGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_i18.b1 MSMg01no100_i18.b1 CHROMAT_FILE:
MSMg01no100_i18.b1 PHD_FILE: MSMg01no100_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:26 2005
         (550 letters)



>mm_chr3_40070298_40071247
          Length = 950

 Score = 1009 bits (522), Expect = 0.0
 Identities = 543/550 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttgattaatctacaataaaatcttttctactcaagattgtcaagagaattttaatcat 60
           ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gcttgattaatctacaatagaatcttttctactcaagattgtcaaaagaattttaatcat 260

                                                                       
Query: 61  gcaataataactaagcaagccattttttactaaacatcagggtacttttagccccaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaataataactaagcaagccattttttactaaacatcagggtacttttagccccaagga 320

                                                                       
Query: 121 tgcagaagggggcataaatagcctgtacatagcttagaagatgcactctgtacaattttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagaagggggcataaatagcctgtacatagcttagaagatgcactctgtacaattttc 380

                                                                       
Query: 181 atgctactaataagtttaccctatagatggtctttattaccccacaaataaaggatatta 240
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 381 atgctactaataagtttaccctatagatggtctttattaagccacaaataaaggatatta 440

                                                                       
Query: 241 aaaggatgaaagaaaagagaagaaaagaagagaaaaggaaagaaaggacaagaaaaaagc 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 aaaggatgaaagaaaagagaagaaaagaagaaaaaaggaaagaaaggacaagaaaaaagc 500

                                                                       
Query: 301 aaacagctctgttttgcaggtagtccgaagcatgtgagttgcctgtgcgctgggaaccgg 360
           ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 501 aaacagctctgttttgcaggtagtctgaagcatatgagttgcctgtgcgctgggaaccgg 560

                                                                       
Query: 361 tgctttgtgactttaagaaacagtataaattgcatttgtttgtgcctgttcattgtgtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctttgtgactttaagaaacagtataaattgcatttgtttgtgcctgttcattgtgtaa 620

                                                                       
Query: 421 atttgtgaaccctgtgcattgactctaagggaactctctgctgagctccagcaatccaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttgtgaaccctgtgcattgactctaagggaactctctgctgagctccagcaatccaca 680

                                                                       
Query: 481 caaccacgttgtcagcctactgtcagcctctgcatgccagccattttggtaagtgctcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaccacgttgtcagcctactgtcagcctctgcatgccagccattttggtaagtgctcct 740

                     
Query: 541 aaatttgata 550
           ||||||||||
Sbjct: 741 aaatttgata 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no100_i18.g1 MSMg01no100_i18.g1 CHROMAT_FILE:
MSMg01no100_i18.g1 PHD_FILE: MSMg01no100_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:26 2005
         (540 letters)



>mm_chr3_40110560_40111499
          Length = 940

 Score = 1029 bits (532), Expect = 0.0
 Identities = 538/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacaccagttcagggtttggctgacatcctggagctttgtgtgagtataaaatgccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcacaccagttcagggtttggctgacatcctggagctttgtgtgagtataaaatgccaag 681

                                                                       
Query: 61  tgtctcagcgtgagccccgttacctacctctaattctttcacacacagatcttccagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtctcagcgtgagccccgttacctacctctaattctttcacacacagatcttccagatg 621

                                                                       
Query: 121 ttttttgggggaggatgtgtctctttataataaaagttatatcagccatcatttccacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttttgggggaggatgtgtctctttataataaaagttatatcagccatcatttccacat 561

                                                                       
Query: 181 attcctatggcacccatttgtgagaatttgtactacattcccaaacatctgcagacagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 attcctatggcacccatttgtgagaatttgtactacattcccaaacatctgcagacagta 501

                                                                       
Query: 241 tctctacaattacttctgaagttactagccacctgtcagcacaggtattactaccccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 500 tctctacaattacttctgaagttactagccacctgtcagcacagggattactaccccatg 441

                                                                       
Query: 301 cactgtcaagtgggaatcaaagttttttattggccactagagctctcctacagacatgtt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 cactgtcaagtgggaatcaaagttttttattggccactagagttctcctacagacatgtt 381

                                                                       
Query: 361 gtaggcagataggaatattttcagcacatacttttattaggtgctgtaaatttagaagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtaggcagataggaatattttcagcacatacttttattaggtgctgtaaatttagaagtt 321

                                                                       
Query: 421 gaacactccacagtgagtacatgagcatatttaaggcatgtgcatgtattcagaactcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaacactccacagtgagtacatgagcatatttaaggcatgtgcatgtattcagaactcac 261

                                                                       
Query: 481 tgagaggctggaatgttggcagggccttaggttaagagtttgagctgaaaatgagatgcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgagaggctggaatgttggcagggccttaggttaagagtttgagctgaaaatgagatgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)