BAC Information

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BAC

Clone NameMSMg01-100M02
Chromosome3 (Build37)
Map Location 147,816,646 - 147,816,890
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps3_1528.1
Downstream geneLOC100040354, Lphn2, LOC100040368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100M02.T7 (MSMg01no100_m02.b1)MSMg01-100M02.TJ (MSMg01no100_m02.g1)
ACCAG316363AG316364
length7631,378
length of high quality
(start - end)
245 (127 - 371)---
definitionCHROMAT_FILE: MSMg01no100_m02.b1 PHD_FILE: MSMg01no100_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:44 2005CHROMAT_FILE: MSMg01no100_m02.g1 PHD_FILE: MSMg01no100_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCCCCCTCACCCTTTTTTTTCTTTTTATTCTCCTTTTCCCCNAAAA
AAAANNAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATGTCTTTCTAAAAAAATAATTGCTTTTTAACATACCAT
TCCCTGAGTTTTAATAATCTCTCTCCCCCTTTCTTCTCTTTCAATCTTTC
TATTTTTATTACTATTTTTAATTACAAGAGATATGTATCAAGATTAAATA
TATAAAAGGTTATTTGAATTTTAGAAGAGACACATTTGAATGATTTAAAA
AAATGTCTATTTCTTCCAAAGTTGTGGTTCACATTATATATATCATATTC
AAATGAATTAGTTATGCTGGAATATGATAGTAGCAGTTTTATATTACGGA
TAAGAAAGGATTAAGTAATTATTACCACAAAATATAATCAACATTATTTT
AAACAAATAATATGATTGCGCTTTTAAGGATGATTTAATTTTGTAAAAAT
TAATAGCCTTTTGCTTTATACTACTACCATGAGGAAAATGGATTTGATGT
CCCAGTTTAATGGCCACAAGCCACTACTTTTTCATTCTCTAGACGGAATA
CCGTGTGAAGTTATTTTTTTCTTCACTCAGGATCAATTCCCTTGCGAAAT
TTGTTGCCCCCCACATTCTTACATCCTCTATATGCCTTGAAGAATGTAAT
AGAGATCACCAATGTGAACCCCCTTACCCTGTTAATTTCTCTGTGCACCC
AACTTTTTTTCTC
NNTTTTTTTNNNNNNNNTTTTNNNNNNNNTTTTTTTNNNCNTTNNNNNNN
NCNNTTNNNCCNNCNCCCNNNNNNCCCCCCCNTCCTTTCCCTTTCTTTCT
CTTTTTCTCTTCTTTCCCTTCCTTTTTTTCTCTATTCCTTTATTCTCTCT
TNNCTCTTTTTCTCTTCTTCTCTCTTCCTCCTCTTCTCCCTCTCCTCTCT
CTTATCTCCTCNTTCTTTTTTTCTAACACTCTTTCTTTATNTTTTCTGTT
TTATCCACTTGTTGCCCCGCACCANCGATACCCCCTCCCCCCCCACTCCT
CACCCTCTTNCTCTCTGCCTTCTTTCTATATCCCTATTTGTATCCCTTTC
TTTCTTTTTTCGCCTNCGCGCTGCCCGTTATTACTCACGTACCGCGATCG
ACACGTCTCGCGCTACCACCTTTATATCCCCTTCTACTTCCAACCACGCC
ATAATGTTGTGATATATACCTTATCCATCGAAAGAGAGTGTTAAAATATG
ATTGTTAGATTTCTGTCTTACGTTCGGGTGTTTGTGTTAATTCTATATNT
CTATTACGGTGATGTTTGTTCGGTTCGCTACTCTTAGCTATTTTGTTTTA
TCTTTCATCCTCCTTAAAATCTATTTCTATATACGCGTTGCGCTACTCAC
TACATTGATAAGCGTATCAACGATTAATGTTCAACAACAATACACACACA
GAAATATAATAATTATAATATAGTGGACTATGGCGTCTTGTATATATTCG
TGTAATAAGAGATCGATAATAAAAATATACGAGTTATATAGCGGTGATAC
GAGGAGATGGGTTGAGTATGTAATGCAGGAGAGGCGGTGTGTATACAGGG
CGTGCTATTGCTAGGGGATAGGATGACTGGAGGTGATCGCGCGGTGCGTA
TTGTGTATGTGCACATATTATTGTTTGTTTGTTGTGTGAGTAGACTATTG
GTGTGATGCGCGAGTGATTGTAGATGTCGAGAGGAATATATATATTGTGT
AATGATACGATCACGATAGTATTGTTAATTTGGTGCAGGGTAGGCGAGTG
AGTGGTATCCTGTCGTCCGGTCGGCCAGCGATGAGGTGAGATCCGTAGGC
TGAGTCGCGGGTGGACAGCGCCCTGCTTCGTGATATGTTTGTTATGGTTA
CAGTAAAACTAATCGTCTGCGGCAACGTGAGAGACGATTAGGAGCGGGCG
GTATGTTTTGCTATGTACTATGTTAGGCAACGGCGTTTTGTGTCACGGCG
CTGTATATAGTCTGTACTATTGTGACATAATAACTATATAAAGCACAAAA
GATGTTATATGATAGGTAGATGTCAGACGATATGCATCATCAGTAAGTTG
TGAGAGACGCTNCTGCAGCGGTAGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_m02.b1 MSMg01no100_m02.b1 CHROMAT_FILE:
MSMg01no100_m02.b1 PHD_FILE: MSMg01no100_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:44 2005
         (245 letters)



>mm_chr3_147816446_147817090
          Length = 645

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%), Gaps = 4/247 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataattgctttttaacataccattccctgagttttaataatctctctccccctttcttc 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aataattgctttttaatataccattccctgagttttaataatctctctccccctttcttc 386

                                                                       
Query: 61  tctttcaatctttctatttttattactatttttaattacaagagatatgtatcaagatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctttcaatctttctatttttattactatttttaattacaagagatatgtatcaagatta 326

                                                                       
Query: 121 aatatataaaaggttatttgaattttagaagagaca-catttgaatgatttaaaaaaatg 179
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 325 aatatataaaaggttatttgaattttagaagaga-atcatttgaatgatttaaaaaaatg 267

                                                                       
Query: 180 tc-tatttcttccaaagttgtggttcacattatatatatcatattcaaatgaattagtta 238
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 -catatttcttccaaagttgtggttcacattatatatatcatattcaaatgaattagtta 208

                  
Query: 239 tgctgga 245
           |||||||
Sbjct: 207 tgctgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)