Query= MSMg01no101_f24.b1 MSMg01no101_f24.b1 CHROMAT_FILE:
MSMg01no101_f24.b1 PHD_FILE: MSMg01no101_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:33 2005
(631 letters)
>mm_chr3_116235167_116236196
Length = 1030
Score = 1120 bits (579), Expect = 0.0
Identities = 620/635 (97%), Gaps = 6/635 (0%)
Strand = Plus / Plus
Query: 1 agcatccagagtcaaaggttttgagcatcattgttggggcagaaaaaaatctcacgattt 60
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 201 agcatccagagtcaaaggttttgagcatcgttgttggggcagaaaaaaatctca-gattt 259
Query: 61 tgtattttctaattagggatgctcattacatagtattatacaacaagaggaaatatcact 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgtattttttaattagggatgctcattacatagtattatacaacaagaggaaatatcact 319
Query: 121 caaatgcaacatttttaaaacttacttaacaggaatggagagatggttcagcagttaaga 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 320 caaatgcaacatttttaaaacttatttaacaggaatggagagatggttcagcagttaaga 379
Query: 181 gcactggctgctcttccaggggacttgggttcagttcagttcctaacacctacatgatag 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 gcactggctgctcttccaggggacttgggttcagttcagttcccaacacctacatgatag 439
Query: 241 ctcacaagtgtctgtatattccccgtccaggggatctgacaccctcagacaggcatacaa 300
|||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcacaagtgtctgta-actccccttccaggggatctgacaccctcagacaggcatacaa 498
Query: 301 acaggcaaaacacccatgtgcataaa---tttaaaaaaaaaattgtttaggggagccaga 357
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 499 acaggcaaaacacccatgtgcataaatttttttaaaaaaaaattgtttaggggagccaga 558
Query: 358 gagatgactcaggggttaagagtactggctgctcttccagaggacctgtgttcaattctc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gagatgactcaggggttaagagtactggctgctcttccagaggacctgtgttcaattctc 618
Query: 418 agcacccatatggaactgtctgtagctccagttccaggggatctgacactgtcacacaga 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agcacccatatggaactgtctgtagctccagttccaggggatctgacactgtcacacaga 678
Query: 478 catacatgcaggcaaaacaccaattcatatacaataagaataaacaaatcacttaaaaaa 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 679 catacatgcaggcaaaacaccaattcatatacaataagaataaacaaatcgcttaaaaaa 738
Query: 538 aaa-aagaagaagaactgatgtacctgaatgtgtaattaaaccttgagataaagggttta 596
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aaagaagaagaagaactgatatacctgaatgtgtaattaaaccttgagataaagggttta 798
Query: 597 gttttgtttttaattttatcatttgttaggggttc 631
|||||||||||||||||||||||||||||||||||
Sbjct: 799 gttttgtttttaattttatcatttgttaggggttc 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1030
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1020
Effective search space: 633420
Effective search space used: 633420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_f24.g1 MSMg01no101_f24.g1 CHROMAT_FILE:
MSMg01no101_f24.g1 PHD_FILE: MSMg01no101_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:33 2005
(249 letters)
>mm_chr3_116381763_116382411
Length = 649
Score = 410 bits (212), Expect = e-119
Identities = 242/256 (94%), Gaps = 7/256 (2%)
Strand = Plus / Minus
Query: 1 gaagttcactgagccaatttcctctaacagtgagacttgagtagtaagtacagaatctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaagttcactgagccaatttcctctaacagtgagacttgagtagtaagtacagaatctga 242
Query: 61 cgatggcttcgaccatttcctagcctggagttttggttatctggtattg-------tatt 113
||||||||||||| |||||||||||||||||||||||||| |||||| | ||
Sbjct: 241 tgatggcttcgaccgtttcctagcctggagttttggttatcaagtattgttttttttttt 182
Query: 114 ttttttttaaatcttaaaaataaagtttattgtttttaaaaaacttacaaataaagagca 173
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttttttgaatcttaaaaataaagtttattgtttttaaaaaacttacaaataaagagca 122
Query: 174 ccacctgtggagagtatccagtcatagactctataactctgaacttatatacatttagag 233
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccacctgtggagagtagccagtcatagactctataactctgaacttatatacatttagag 62
Query: 234 caggcatttgaacgga 249
||||||||||||||||
Sbjct: 61 caggcatttgaacgga 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
