CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGCTGTCCATATACTCTGAAATAAGCTCTAATTAATACAATATTCT
CCTGCATATATGATTTTTATGACAGTAGGTCAGGACAGGTAATTTTATTT
CTCATATACCCCCTCAACTCAGTTGACATTGACTGTTTCAGTGAATCTCC
TCCCAAATATGCCCTGGCAATGAAAACACAACTCAGTTAATATGAATACA
TGCTGTTTGCCTAGATTGGGCAGATCTACTGCTATACTACCGTCTTCCAC
ATCTATGAGACCCCTTATAATGTGCGGATTCTCCAGGCTATGTGCTTCTG
CTCCATTTTTCTTCTTCCTCCTCCTCTTCGTCCTCTCCGTCTTCCATTTT
TTCCTTCTTCTCTCCCTCATCTTCTGCTCCACCTTCCCTTTTATCTGCCT
AATCATCAGCTCTCCTTTATTTTACAAATTAAGGTGGAAAGCAGGTTTAC
AGGAAATCACCTGAGTCCTGACTCATTCCTTGTTTGGGTTGGCAACCATT
TCCAGGAGAATGGAATTAACATAAAATATAATTAGCCCCAGGGCTATCCA
CAACACCTTCTTCCACATCTATGAGACCCCTTATAACCTGTGGTTTCTCC
AGGCCATGTGCTTATGCTCTGCTTTTCCTCCTCCCCCTCCTCCCCTCCCT
CCCT

GAAAGCATAATATCGCCCCTGTATAATGCCTCCCTCCCCCCCCCCCCAAC
CNNTNTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTTTTCTTTTATTTTAT
TCAACATATTTTTATTGATTATTCAGGAATTTTGCATAATGCACCCCAAT
CACACTAACAGAAGAAAAACTCTGTCAGTGCTGTCCTCTGAGGAAAATGT
GTATGGCTTTGCTAGATATCACAGTAAGGAGATTAGCTATATATGGAAAC
ACATATGTCCCGGTGTTCCTTTTATTAAGGAATATAAACAAATGAACAAA
TTCTAGAAACAGAGTATAGCCAGGGGCTCTTATTCGGTTACAGGAAGCCA
GGACCCCCTAGCCAGACCGTTTGGGAACTGCCACTCAAAATCTAGGGACC
ATAGTAATATAGCACACTTGAAATGTGATGAAACAGGAGATCTCAAATGT
TCTATGCACTTTAAGGGGAAACTCCCTACGTTGTTGAATGTGATTTAAGT
ACCCCATTCAATTTATGCCTTTTTAAAAATAATACTTTATATACCAGATC
TTATAATTATTTATGGTTTAATTTTACTTTCCTTTTTATCCTTCCTTAAA
TGATCCCTATTTACACACGCTGCCTTATAGAAAATTTTTATTTACTCCTT
AAATCCATTCCTTACTACCGCTTTGCGTTTTACACCCAATTTGTAAAATT
TCTCTCTTTTCTTTTAATTTTATCTATTAGGCTTACCTTCCCTTTTTCAA
AAATACTTC

Query= MSMg01no101_m05.b1 MSMg01no101_m05.b1 CHROMAT_FILE:
MSMg01no101_m05.b1 PHD_FILE: MSMg01no101_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:06 2005
         (656 letters)



>mm_chr3_123600210_123601265
          Length = 1056

 Score = 1056 bits (546), Expect = 0.0
 Identities = 625/652 (95%), Gaps = 2/652 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgctgtccatatactctgaaataagctctaattaatacaatattctcctgca 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgctgtgcatatactctgaaataagctctaattaatacaatattctcctgca 264

                                                                       
Query: 65  tatatgatttttatgacagtaggtcaggacaggtaattttatttctcatataccccctca 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 265 tatatgatttttatgacagtagatcaggacaggtaattttatttctcatatactccctca 324

                                                                       
Query: 125 actcagttgacattgactgtttcagtgaatctcctcccaaatatgccctggcaatgaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actcagttgacattgactgtttcagtgaatctcctcccaaatatgccctggcaatgaaaa 384

                                                                       
Query: 185 cacaactcagttaatatgaatacatgctgtttgcctagattgggcagatctactgctata 244
           ||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||| |
Sbjct: 385 cacaactcagttaatatgaatccatgctgtgcgcctagattgggcagatctaccgctaca 444

                                                                       
Query: 245 ctaccgtcttccacatctatgagaccccttataatgtgcggattctccaggctatgtgct 304
           ||||| || |||||||||||||||||||||| ||  |||||||||||||||| |||||||
Sbjct: 445 ctaccatcctccacatctatgagaccccttagaacatgcggattctccaggccatgtgct 504

                                                                       
Query: 305 tctgctccatttttcttcttcctcctcctcttcgtcctctccgtcttccattttttcctt 364
           |||| ||||  ||||||| ||||||||||||| |||||||| | ||||||||||||||||
Sbjct: 505 tctgttccacctttcttcctcctcctcctctttgtcctctctgacttccattttttcctt 564

                                                                       
Query: 365 cttctctccctcatcttctgctccaccttcccttttatctgcctaatcatcagctctcct 424
           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 cttctctcccccatcttctgctccatcttcccttttatctgcctaatcatcagctctcct 624

                                                                       
Query: 425 ttattttacaaattaaggtggaaagcaggtttacaggaaatcacctgagtcctgactcat 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 ttattttacaaattaaggtggaaagcaggttttcaggaaatcacctgagtcctgactcat 684

                                                                       
Query: 485 tccttgtttgggttggcaaccatttccaggagaatggaattaacataaaatataattagc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccttgtttgggttggcaaccatttccaggagaatggaattaacataaaatataattagc 744

                                                                       
Query: 545 cccagggctatccacaacaccttcttccacatctatgagaccccttataacctgtggttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccagggctatccacaacaccttcttccacatctatgagaccccttataacctgtggttt 804

                                                               
Query: 605 ctccaggccatgtgcttatgctctgcttttcctcctccccctcctcccctcc 656
           |||||||||||||||||||||||||||||||| |||||||||  ||||||||
Sbjct: 805 ctccaggccatgtgcttatgctctgcttttccccctccccct--tcccctcc 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)