Query= MSMg01no102_d03.b1 MSMg01no102_d03.b1 CHROMAT_FILE:
MSMg01no102_d03.b1 PHD_FILE: MSMg01no102_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:42 2005
(454 letters)
>mm_chr3_56039651_56040504
Length = 854
Score = 870 bits (450), Expect = 0.0
Identities = 453/454 (99%)
Strand = Plus / Plus
Query: 1 atctgcatactgagtaacttcctgctacttctgagagtaactctggtgtctttatgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atctgcatactgagtaacttcctgctacttctgagagtaactctggtgtctgtatgctgt 260
Query: 61 cagctatctgaagctaagccttctttctttagtggaaaggcacaggtctgaaaattgctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctatctgaagctaagccttctttctttagtggaaaggcacaggtctgaaaattgctg 320
Query: 121 cagtttaatatctaacaacttattgcagctctctgcaagttcagacattttctgcatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtttaatatctaacaacttattgcagctctctgcaagttcagacattttctgcatcac 380
Query: 181 acagagaacaaatgtagctaagtgttaattaaaaagaacatcttgagtgtaaacattaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagagaacaaatgtagctaagtgttaattaaaaagaacatcttgagtgtaaacattaaa 440
Query: 241 aattgatcaccttctgtgagcaatttaatttatgaacattaacatattctaagctgatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattgatcaccttctgtgagcaatttaatttatgaacattaacatattctaagctgatgt 500
Query: 301 cttgaatttcagtggaacatcttcactgagtatgaaggggaggaaggaactgtgacatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgaatttcagtggaacatcttcactgagtatgaaggggaggaaggaactgtgacatgg 560
Query: 361 acatgttcaaacctctgccttgtcatcacatgtgtgcagacactggggcctgaacagccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatgttcaaacctctgccttgtcatcacatgtgtgcagacactggggcctgaacagccc 620
Query: 421 cttcagcaaggctctgacagcagcagctgcaaaa 454
||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcagcaaggctctgacagcagcagctgcaaaa 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_d03.g1 MSMg01no102_d03.g1 CHROMAT_FILE:
MSMg01no102_d03.g1 PHD_FILE: MSMg01no102_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:42 2005
(469 letters)
>mm_chr3_56170409_56171277
Length = 869
Score = 874 bits (452), Expect = 0.0
Identities = 468/480 (97%), Gaps = 11/480 (2%)
Strand = Plus / Minus
Query: 1 attcacagtgaaagccaagagccatttcagtcatacacacacacacacacacacacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 attcacagtgaaagccaagagccatttcagtcatacacacacacacacacacacacacac 438
Query: 61 acacaca-----------aaacaaacaataaaagaaagagaaaataatgcttttagcaac 109
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acacacacacacacaaacaaacaaacaataaaagaaagagaaaataatgcttttagcaac 378
Query: 110 agtactgattttgcattttattgctgtcagcttttgactatactctccttctactctagg 169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 377 agtactgattttgcattttattgctgtcagcttttgactatactctccttctactccagg 318
Query: 170 agacaaagaagggtgtgtacataaagcatcatttcagctgctagggcattcttgagcagt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agacaaagaagggtgtgtacataaagcatcatttcagctgctagggcattcttgagcagt 258
Query: 230 tgtttgtgttgcaattttacaggaccacttttctcaggagacaccattttttacttaaaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgtttgtgttgcaattttacaggaccacttttctcaggagacaccattttttacttaaaa 198
Query: 290 taacagttgatagacaagctatcattgttcatgttgtgtctctggaagatgcactgttga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 taacagttgatagacaagctatcattgttcatgttgtgtctctggaagatgcactgttga 138
Query: 350 aaaaaagggcaggatgctcttgtcacttcaaggagaagaagccacagaaatttcactaat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 aaaaaagggcaggatgctcttgtcacttcaaggagaagaagccacagaaatttcactaat 78
Query: 410 aataaaattcaagatttctagggaaaatgaaaattttggaagactcatatctgcctttgt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 aataaaattcaagatttctagggaaaatgaaaattttggaagactcatatctgcctttgt 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
