BAC Information

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BAC

Clone NameMSMg01-102F06
Chromosome3 (Build37)
Map Location 122,263,482 - 122,263,877
singlet/doubletsinglet
Overlap geneFnbp1l
Upstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
Downstream genePpia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102F06.T7 (MSMg01no102_f06.b1)MSMg01-102F06.TJ (MSMg01no102_f06.g1)
ACCAG317504AG317505
length771707
length of high quality
(start - end)
405 (131 - 535)169 (81 - 249)
definitionCHROMAT_FILE: MSMg01no102_f06.b1 PHD_FILE: MSMg01no102_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:53 2005CHROMAT_FILE: MSMg01no102_f06.g1 PHD_FILE: MSMg01no102_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCCNNNNNCCCATT
TAANNNNNNCAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAGAATATCCTGATTTCTAAGGTTTAATACTTGAG
TTTTGGAACTGGAACTGTATCATCATACAAAATGCTTTCTTACATCATGT
AAAACGCTAGGTTTTATTTCCAAACTGAAAAAAAAAAATTCTAACTTAAA
ATTAACTCTTTAGCTAGGCATGGTGGTGCATGCCTTTAATCCCAGCCCTG
GGAAAACAGGAGCAGGTGGGTTTCTGTGAGCTCAGGCCAACCAGGGAAGA
TAAACAGTGGAACCTTGTCTCAAAAAAATTCTCTGAACTCAACTAGACTA
AACTTACCTTGTAAATCTGATGAATTACCACATAACCAATGTTTGTGCTG
TTCTCCATTAAAATTTTGCAGCTGTGCAGCATATTCATTTTTATTCTCAT
CAGCCATATGCGTACGAAGGTTCAACTGCTGTTTGGCCTACAGGTAAAAA
TGGTCCAAATGATTGCCAAAAATAAAGTAATTCATTTTTCTGAAAATTAT
ACCAAACCTAAATTGTGTTATAGATAACCCAACAGCCAAGTGAAAATGCT
TTCCAGATCTTACAGGCTCCTTATGACAAACCCTCTGTCCCTATGAAAGC
TCTGCTCTACTCCATAATATACAAAATCTACTTATAAAATTTCCCTCAGA
AGAAATTAAATGATACTATAG
TCGATGATGTGGGAGCCTGGCGGCGCCTGATTCGTACTGGGGGTGACCTA
TAGAAGGTGCTTGACCTACTCTGGNGTGTTTACATTTGGTCATTTCAGGT
TTGATGCTGCAGTCTTTAATGCATTTGGAGTGGATTCTTGTACAGGGTGA
TGGATGATCCAAACTTCATCCTGCATGTGCACATCTGCTTGGGGGAGCAC
TCAAGGAAGCATTATTTCTTATATGTTTCTGTTTGAAATATTTAGGTTCA
TTTAGCCATTTAGCCCCAAACCTTTTCCTTTCCAGCACCAACAAACCCTG
GGTTTTGTCTATATGTTCTCTTTCTGCTGCGCGAGAGAGAGCATGATGCA
TGTTTTTTTTCTTCCCCCCCCCCCCCAGGACAATCTTAGGTGTCAAGCTT
CATCTTGCCCTTACTATAAAAAAAAATGTAATGTTCGCTGTTCTGCGTGC
CATCGTAACTTTTTGACAATAAGCTTCCATACACTCCGCTGTCTATTACT
CCCGTTTGACCCACTAGTACTCATACCCTTCTTGTTTATAGCAGCATTTC
TGAGCATGTAGCTGTCCTCTACCTGGCCTGGCCCACATGTGTGCCTCAAG
TCTTTGACCTCATCTCAGCCCTGATCTCTCGTCCCTTTTTCCTTACACCT
GCATTATCTTTTCTCACTCTTTCATTCCCCATTCCTTTCTCCCCCCTTCT
CAATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_f06.b1 MSMg01no102_f06.b1 CHROMAT_FILE:
MSMg01no102_f06.b1 PHD_FILE: MSMg01no102_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:53 2005
         (405 letters)



>mm_chr3_122263282_122264085
          Length = 804

 Score =  698 bits (361), Expect = 0.0
 Identities = 391/405 (96%), Gaps = 9/405 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaggtttaatacttgagttttggaactggaactgtatcatcatacaaaatgctttct 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tctaaggtttaatacttgagttttggaactggaactgtatcatcatgcaaaatgctttct 260

                                                                       
Query: 61  tacatcatgtaaaacgctaggttttatttccaaactgaaaaaaaaaaattctaacttaaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tacgtcatgtaaaacgctaggttttatttccaaactgaaaaaaaaaa-ttctaacttaaa 319

                                                                       
Query: 121 attaactctttagctaggcatggtggtgcatgcctttaatcccagccctgggaaaacagg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 attaactctttagctaggcatggtggtgcatgcctttaaccccagccctgggaaaacagg 379

                                                                       
Query: 181 agcaggtgggtttctgtgagctcaggccaaccagggaagataaacagtggaaccttgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcaggtgggtttctgtgagctcaggccaaccagggaagataaacagtggaaccttgtct 439

                                                                       
Query: 241 caaaaaaattctctgaactcaactagactaaacttaccttgtaaatctgatgaattacca 300
           |||||||||||||       |||||||||||||||||||||||||||||| |||||||||
Sbjct: 440 caaaaaaattctc-------aactagactaaacttaccttgtaaatctgaggaattacca 492

                                                                       
Query: 301 cataaccaatgtttgtgctgttctccattaaaattttgcagctgtgcagcatattcattt 360
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cataaa-aatgtttgtgctgttctccattaaaattttgcagctgtgcagcatattcattt 551

                                                        
Query: 361 ttattctcatcagccatatgcgtacgaaggttcaactgctgtttg 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttattctcatcagccatatgcgtacgaaggttcaactgctgtttg 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 804
Length adjustment: 9
Effective length of query: 396
Effective length of database: 795
Effective search space:   314820
Effective search space used:   314820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)