Query= MSMg01no102_f19.b1 MSMg01no102_f19.b1 CHROMAT_FILE:
MSMg01no102_f19.b1 PHD_FILE: MSMg01no102_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:56 2005
(472 letters)
>mm_chr3_79154795_79155666
Length = 872
Score = 820 bits (424), Expect = 0.0
Identities = 466/490 (95%), Gaps = 18/490 (3%)
Strand = Plus / Plus
Query: 1 aatgctgcacagatttccatatagttacttgctgtctctgcctttgttggtgtcatagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgctgcacagatttccatatagttacttgctgtctctgcctttgttggtgtcatagat 260
Query: 61 tcaagtttgcccactttagagtaagtggggcagttttggttccgtgtgtgtgtgtgtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagtttgcccactttagagtaagtggggcagttttggttccgtgtgtgtgtgtgtgtg 320
Query: 121 tgtgtgtg----------------aaaatccttttgtg-tttttttttcttttttttatt 163
|||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 321 tgtgtgtgtgtgtgtgtatgtgtgaaaatccttttgtggtttttttttcttttttttatt 380
Query: 164 agatattttctttatatacatttcaaatttcaaatgctatcccgaaagttccctataccc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatattttctttatatacatttcaaatttcaaatgctatcccgaaagttccctataccc 440
Query: 224 tccccctaccctaatcccctacacatcctttcttgcttcttggccctggcattcccctgt 283
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 441 tccccctaccctaatcccctacacacccactcttgcttcttggccctggcattcccctgt 500
Query: 284 actgggtcatataaagtttgcaataacaaggggcctctcttccaagtgatggctgactag 343
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 actgggtcatataaagtttgcaataacaaagggcctctcttccaagtgatggctgactag 560
Query: 344 gccaacttttgctacatatgcagctaaagacactagctctgggggg-tactggttagttc 402
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 561 gccaacttttgctacatatgcagctagagacactagctctgggggggtactggttagttc 620
Query: 403 atattgttgttccacctatagggttgcagaccccttcagctccttgggtgctttctctat 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atattgttgttccacctatagggttgcagaccccttcagctccttgggtgctttctctag 680
Query: 463 cttctccatt 472
||||||||||
Sbjct: 681 cttctccatt 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_f19.g1 MSMg01no102_f19.g1 CHROMAT_FILE:
MSMg01no102_f19.g1 PHD_FILE: MSMg01no102_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:56 2005
(412 letters)
>mm_chr3_79296896_79297707
Length = 812
Score = 797 bits (412), Expect = 0.0
Identities = 412/412 (100%)
Strand = Plus / Minus
Query: 1 attctcggtattctgcacaagcattctgagtgtcaccccacgacaagacagcttaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 attctcggtattctgcacaagcattctgagtgtcaccccacgacaagacagcttaccttc 553
Query: 61 agcgactcagtgatacatggccgcttttcaaacctaattttcctccaggtcaactgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agcgactcagtgatacatggccgcttttcaaacctaattttcctccaggtcaactgatga 493
Query: 121 gacatttagcttggccgaagaaacgtgtagctctaatccagctatggttagaaggaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gacatttagcttggccgaagaaacgtgtagctctaatccagctatggttagaaggaagaa 433
Query: 181 gatcgccatcagcatcatcttttccctgtgtgagagagaggccgcccagcgggatttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gatcgccatcagcatcatcttttccctgtgtgagagagaggccgcccagcgggatttcca 373
Query: 241 ggacttctttttctcccacttccccctgtttgaatctcacatgaacaggctgaagggtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggacttctttttctcccacttccccctgtttgaatctcacatgaacaggctgaagggtgc 313
Query: 301 aatcgaaaaggtaagggccccgggctccattccaggcaaacacttaaataaggaaatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 aatcgaaaaggtaagggccccgggctccattccaggcaaacacttaaataaggaaatgga 253
Query: 361 aggtgatatgattgtgacctacttagtggccaataggggagagatttgcagt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aggtgatatgattgtgacctacttagtggccaataggggagagatttgcagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
