BAC Information

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BAC

Clone NameMSMg01-102G15
Chromosome3 (Build37)
Map Location 30,635,653 - 30,636,102
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik
Downstream geneSamd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102G15.T7 (MSMg01no102_g15.b1)MSMg01-102G15.TJ (MSMg01no102_g15.g1)
ACCAG317566AG317567
length747701
length of high quality
(start - end)
225 (89 - 313)530 (69 - 598)
definitionCHROMAT_FILE: MSMg01no102_g15.b1 PHD_FILE: MSMg01no102_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:00 2005CHROMAT_FILE: MSMg01no102_g15.g1 PHD_FILE: MSMg01no102_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGTCCACNNNAAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCATGACTCTCTCCCTTTCTGGTGGATATGGC
TATGCCAATTTCCCGTCAAACAATATGTACCCACAATTTCCCTTAAACTT
TTCATTATATTTATTTACTGTGTGTGCCTGTGCATGTGTCTGCTACAGCA
AATATACAGACATCACCAGACAACTTTGGGGACAATCAGTTCTCTCTCTT
CACCATGTGGTTCTCACATTCATAGCAACAGGCTTCACGGCAAGTGCCTG
TATTTCACCAGTCCTGGAACTGACTCTTACAACACCTTTTTATTTTACTT
CTAGTCCATCTAACCTGGTGTATGTTTCTTTACCCTCCCCCCCTCCCCAC
GTACCCAATATCTTATTTTCATGGTCGCATGCTCACTCATCCCATTTCAT
TCCTCGCTCTTTTCCATGTTTCTCTGACCGATTAATCCTCCCTCTCCATT
TCTATCGCTGCTTCTTGTTTCTGTTTTTCTTTTGCTCTTAGTGTCTGCCC
ATGTTATCTTCTCCCTACCTTCTGTCTTAAAACCCCCTCCTTTACTCTCA
GCTATTTTTCTACCTCCTCTTTTTCTCTTCCTTTACATCCCCTCTTTCTT
ATTCCTTTCTCCTTCACTCCCCTCACTTCCTTCCCCCTTTCTCCCCCCCT
CTCCCTCCTCCCTACCTTTTCCACCTCTTCTCCCCTTCTCACTCTAA
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATTATGTACCTTTGCCCTGTTTCATAGTCAC
TCTGCTTTGTTTCTTTGTTTCTTTCTTTGTTCTTTGTTTCTTCCTAAATG
GGTGTTCAGATCCCCTGAACATGGAGGCACACACATTTCTTGACTCCTCA
GGAGTGGAATATGAGAATTCTATTTTTGCTTTTTGAGGAGCTGCCACGCT
GCTTCCCACAGCAGCTGTGTTCTCTTTATATCCCCTATGGCAAGACTATG
CACAGGCTTCGGTTTCCCTGCATCCCTGCCAGCGCTTGTGATTTCTTCAG
TAACAGTGATTCTCCTGTGTGTGAGCCCACGGCTCCTTATGCCCTTGATT
TGCATTCCGCTATGCTGTCCAGTAAACACCCAGTGGCTTGCTGAGGGTTT
TACAGTTCAGCTGGAAACATTTCCTTCACCTGTCTTGCCTCGCTCTGGGT
CAGGTTGCTTGACTCTGGTTGTTGATTTGGAAGCTGGATATTAACCCCTT
GTCAGAGATACAATTTTCAAATATTTTCTGCCACCCCGTGGAAGACCCTC
TCATACTGATGATTGTGCCCTTAGAAGATTTAATTTTTAATAAAATCCAA
TTTACTTTACTTTTTTGCCTTTGCCTTTGGAGTCATATAAGGAATAATTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_g15.g1 MSMg01no102_g15.g1 CHROMAT_FILE:
MSMg01no102_g15.g1 PHD_FILE: MSMg01no102_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:00 2005
         (530 letters)



>mm_chr3_30635173_30636102
          Length = 930

 Score =  818 bits (423), Expect = 0.0
 Identities = 444/451 (98%), Gaps = 1/451 (0%)
 Strand = Plus / Minus

                                                                       
Query: 80  atgggtgttcagatcccctgaacatggaggcacacacatttcttgactcctcaggagtgg 139
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 atgggtgttcagatcgcctgaacatggaggcacacacatttcttgactcctcaggagtgg 871

                                                                       
Query: 140 aatatgagaattctatttttgctttttgaggagctgccacgctgcttcccacagcagctg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aatatgagaattctatttttgctttttgaggagctgccacgctgcttcccacagcagctg 811

                                                                       
Query: 200 tgttctctttatatcccctatggcaagactatgcacaggcttcggtttccctgcatccct 259
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 810 tgttctctttatatcccctacggcaagactatgcacaggcttcggtttccc-gcatccct 752

                                                                       
Query: 260 gccagcgcttgtgatttcttcagtaacagtgattctcctgtgtgtgagcccacggctcct 319
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 751 gccagcgcttgtgatttcttcagtaacagtgattctcctgtgtgtgagcccatggttcct 692

                                                                       
Query: 320 tatgcccttgatttgcattccgctatgctgtccagtaaacacccagtggcttgctgaggg 379
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tacgcccttgatttgcattccgctatgctgtccagtaaacacccagtggcttgctgaggg 632

                                                                       
Query: 380 ttttacagttcagctggaaacatttccttcacctgtcttgcctcgctctgggtcaggttg 439
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 631 ttttacagttcagctggaaacatttccttcacctgtcttgcttcgctctgggtcaggttg 572

                                                                       
Query: 440 cttgactctggttgttgatttggaagctggatattaaccccttgtcagagatacaatttt 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cttgactctggttgttgatttggaagctggatattaaccccttgtcagagatacaatttt 512

                                          
Query: 500 caaatattttctgccaccccgtggaagaccc 530
           |||||||||||||||||||||||||||||||
Sbjct: 511 caaatattttctgccaccccgtggaagaccc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)