BAC Information

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BAC

Clone NameMSMg01-102N11
Chromosome3 (Build37)
Map Location 33,691,874 - 33,692,131
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp13, Pex2, EG545512, LOC100041058
Downstream geneTtc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102N11.T7 (MSMg01no102_n11.b1)MSMg01-102N11.TJ (MSMg01no102_n11.g1)
ACCAG317877AG317878
length701767
length of high quality
(start - end)
263 (43 - 305)455 (125 - 579)
definitionCHROMAT_FILE: MSMg01no102_n11.b1 PHD_FILE: MSMg01no102_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:33 2005CHROMAT_FILE: MSMg01no102_n11.g1 PHD_FILE: MSMg01no102_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTATACGACTCCTATATTCAGAAATCGGCGGAATTCTGT
TGCTTCTCTTATCACCGTTGGTATTGCCAGTGTTCTGGAGTATGGTCTAG
TAAGCTTCATTGGTGTCTCATTGTAGTTGTAATTTGAATTTCCCTGATGC
AATATGATGTAGCACAGGTTTTCATATGTGTATTTTTCATCTTTACCTGT
AGAATACTGTCTTGATTATTATATTTTTATACTAAATCTGAAGTTCTCAG
GTTATCCTTTTCATTTTTTTCCTAAAATAAAAAACGTATTGTTGTTTTCT
CCCACCATACATATTTTGATGTTTTGGAACTAAAGAATCCTTTTTCTTTT
GTTTTATTTGAGACATGTCTTCCTGTGTAGTCCAGGCTAGTCTTGAGCCA
TCATTCCTGTTGCCTTGGCTTCTAGTTCTGGCATTTTAGGCGTGAACCAA
CCATCACCATGCCTGGTTTGAAACTAATGGTTGATTATTACCATTTATTA
CTCTCTGCCTTTTCTTCTGCCATTTGACCAACGCCTAGCCATGATAACGG
TATTCACCGTTCCCCCCTTACTACCTCCCTTTAAAATTTGCATCATCCAC
TTGTTCGTGTCGCCCGCGCGCGTGTTCGCTTTGTCCCCCTCTTATCCATT
ATTTTTACCCCCTATCCCCCCTTCTCCCTACCCCCTTTTATCATTTCTTC
T
NNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCACGATCC
CNNNNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCACTCGCGGAATTCCTACACTTTTCAGTTCCCG
AATTCCCTCAGTTTTAGTTTTCTTTATTGATTTTATTGATTTTCAGATTT
TGAACAGTTTTATTAATTTCCTTCCACTGTTTGTGCTTTCCTTGATTTCC
TTATTTATTCATTCATACTTTTGCTTGCATTTTTCCTGGATTTCTTTAAG
GGATTTATTCGTTTTTCTCTTGAAGGGTCTCCATTATATTCATATAGTTG
GCTTTGAGGTCTTTTTCTTGTGTTTCAGCTATGTTCAGTATTCAGTGCCT
GCTGTGGCTTTGATGGAGACACACTGCCTAGGCTGTTAAAATTGTGTTCG
TATGGTAGCATGTAAACATCTGGAATTGGGTTGATTTTAGGCCTAGGTGC
AGATTTCTGTATTTGTCTTCTTTGGGTGGGTGTTTTGTTCCTTGGTTTCT
GTTTTCTTTCCAGGTTTTTGGAGAGTGGCTTAGGTGTGTTGCCAGGTAAG
AAATTTTCTTTGGGTCTGATAATTGTTGCCTGTATAGATTCTGGGTGAAA
GGTGTTTCTGACCATTGGATGCTGACACCCGTCAATTGGCATGGTTCAGA
AGTCCGAAAGAGTCTGTACAACAAAGGAGACCCTACTGTTGTCCAAGATA
TTCTTGTTTCATCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_n11.b1 MSMg01no102_n11.b1 CHROMAT_FILE:
MSMg01no102_n11.b1 PHD_FILE: MSMg01no102_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:33 2005
         (263 letters)



>mm_chr3_33691670_33692332
          Length = 663

 Score =  451 bits (233), Expect = e-131
 Identities = 254/263 (96%), Gaps = 6/263 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctgttgcttc-tcttatcaccgttggtattgccagtgttctggagtatggtctagt 59
           |||||||||||||| | |||||||  ||   |||||||||||||||||||||||||||||
Sbjct: 205 aattctgttgcttcatattatcac--tt---attgccagtgttctggagtatggtctagt 259

                                                                       
Query: 60  aagcttcattggtgtctcattgtagttgtaatttgaatttccctgatgcaatatgatgta 119
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagcttcagtggtgtctcattgtagttgtaatttgaatttccctgatgcaatatgatgta 319

                                                                       
Query: 120 gcacaggttttcatatgtgtatttttcatctttacctgtagaatactgtcttgattatta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcacaggttttcatatgtgtatttttcatctttacctgtagaatactgtcttgattatta 379

                                                                       
Query: 180 tatttttatactaaatctgaagttctcaggttatccttttcatttttttcctaaaataaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatttttatactaaatctgaagttctcaggttatccttttcatttttttcctaaaataaa 439

                                  
Query: 240 aaacgtattgttgttttctccca 262
           |||| ||||||||||||||||||
Sbjct: 440 aaacttattgttgttttctccca 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)